HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AY455324		     297 bp    RNA     linear	VRL 12-APR-2004
DEFINITION  HIV-1 isolate patient 57 clone PR5 from USA protease (pol) gene,
	    partial cds
ACCESSION   AY455324
VERSION     AY455324.1 GI:42564297
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Kieffer,T.L., Finucane,M.M., Nettles,R.E., Quinn,T.C., Broman,K.W.,
	    Ray,S.C., Persaud,D. and Siliciano,R.F.
  TITLE     Genotypic Analysis of HIV-1 Drug Resistance at the Limit of
	    Detection: Virus Production without Evolution in Treated Adults
	    with Undetectable HIV Loads
  JOURNAL   J. Infect. Dis. 189 (8), 1452-1465 (2004)
  PUBMED    15073683
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Kieffer,T.L., Finucane,M.M., Nettles,R.E., Quinn,T.C., Broman,K.W.,
	    Ray,S.C., Persaud,D. and Siliciano,R.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2003) Department of Medicine, Division of
	    Infectious Diseases, Johns Hopkins University School of Medicine,
	    720 Rutland Avenue, Ross 1049, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient 57"
		     /isolation_source="plasma from patient with 17 months of
		     ART"
		     /db_xref="taxon:11676"
		     /clone="PR5"
		     /country="USA"
     gene	     <1..>297
		     /gene="pol"
		     /note="PR"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAS20625.1"
		     /db_xref="GI:42564298"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLETGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVKQYDQIPIEVCGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF"
BASE COUNT	106 a	  49 c	   68 g     74 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggagg gcaattaaag 
      61 gaagctcttt tagaaacagg agcggatgat acagtgttag aagaaatgaa tttgccagga 
     121 agatggaaac cgaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagataccca tagaagtctg tggacataag gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaacctgttg actcagcttg gttgcacttt aaatttt
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.