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LOCUS	    AY429226		     297 bp    RNA     linear	VRL 05-JAN-2004
DEFINITION  HIV-1 isolate C42p20_5.6 from USA protease (pol) gene, partial cds
ACCESSION   AY429226
VERSION     AY429226.1 GI:40455960
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Persaud,D., Siberry,G.K., Ahonkhai,A., Kajdas,J., Monie,D.,
	    Hutton,N., Watson,D.C., Quinn,T.C., Ray,S.C. and Siliciano,R.F.
  TITLE     Continued Production of Drug-Sensitive Human Immunodeficiency Virus
	    Type 1 in Children on Combination Antiretroviral Therapy Who Have
	    Undetectable Viral Loads
  JOURNAL   J. Virol. 78 (2), 968-979 (2004)
  PUBMED    14694128
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Persaud,D., Siberry,G.K., Ahonkhai,A., Kajdas,J., Monie,D.,
	    Hutton,N., Watson,D.C., Quinn,T.C., Ray,S.C. and Siliciano,R.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2003) Department of Medicine, Division of
	    Infectious Diseases, Johns Hopkins University School of Medicine,
	    720 Rutland Avenue, Ross 1049, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="C42p20_5.6"
		     /isolation_source="plasma; pediatric patient C42, 20
		     months of ART"
		     /db_xref="taxon:11676"
		     /clone="5.6"
		     /country="USA"
		     /note="subtype: B"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /note="PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAR86070.1"
		     /db_xref="GI:40455961"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRLYEQIPIEICGHKAEGTVLVGPTPVNIIGRNLLTQIGCTLNF"
BASE COUNT	109 a	  50 c	   67 g     71 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag actgtatgaa 
     181 cagataccca tagaaatctg tggacataaa gctgaaggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcactct aaatttc
//
last modified: Tue May 31 10:56 2022


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