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LOCUS AY428722 1302 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 779 from Uganda pol protein (pol) gene, partial cds
ACCESSION AY428722
VERSION AY428722.1 GI:38146502
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Comparison of nevirapine (NVP) resistance in Ugandan women 7 days
vs. 6-8 weeks after single-dose nvp prophylaxis: HIVNET 012
JOURNAL AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004)
PUBMED 15242535
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Distinct patterns of emergence and fading of K103N and Y181C in
women with subtype A vs. D after single-dose nevirapine: HIVNET 012
JOURNAL J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
PUBMED 16123677
REFERENCE 3 (bases 1 to 1302)
Show all sequences for reference 3
AUTHORS Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2003) Dept. Of Pathology, The Johns Hopkins
Medical Institutions, 720 Rutland Ave. Ross Bldg. Room 646,
Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="779"
/db_xref="taxon:11676"
/clone="146631-A"
/country="Uganda"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAR11624.1"
/db_xref="GI:38146503"
/translation="PQITLWQRPLVTVKIGGQQKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRLKNPE
IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYAGIKIRQLCKCIRGTKALTEVV
PLTEEAELELAENREILKEPVHGVYYDSSKDLIAEIQKQGQD"
BASE COUNT 525 a 210 c 273 g 292 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgaccccta gtcacagtaa agataggggg acagcaaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat
181 caaatacttg tagaaatttg tggacataaa gctataggta cggtattggt aggacctaca
241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaatttccca
301 attagtccta tagagactgt accagtaaaa ttaaaaccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagmaatttg tacagaaatg
421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc cttataatac cccaatattt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat
541 aaragaactc aagacttctg ggaagttcaa ctaggaatac cacatcccgc agggctaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 gaaggcttta gaaagtatac tgcattcacc atacctagta caaacaatga gacaccagga
721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccag
781 tatagcatga caaaaatctt agagcccttt agattaaaaa acccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatca gacttagaaa tagggcagca tagaataaaa
901 atagaggaat taagggaaca cctattgaag tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgacaa atggacagta
1021 cagcctatag aactgccaga aaaagaaagc tggactgtca atgatataca gaagctagtg
1081 gggaaattaa actgggcaag ccagatttat gcaggaatta aaataagaca attatgcaaa
1141 tgcattaggg gaaccaaagc attgacagaa gtagtaccac tgacagaaga agcagaatta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgactca
1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022