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LOCUS	    AY428722		    1302 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 779 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AY428722
VERSION     AY428722.1 GI:38146502
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Comparison of nevirapine (NVP) resistance in Ugandan women 7 days
	    vs. 6-8 weeks after single-dose nvp prophylaxis: HIVNET 012
  JOURNAL   AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004)
  PUBMED    15242535
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Distinct patterns of emergence and fading of K103N and Y181C in
	    women with subtype A vs. D after single-dose nevirapine: HIVNET 012
  JOURNAL   J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
  PUBMED    16123677
REFERENCE   3 (bases 1 to 1302)
            Show all sequences for reference 3
  AUTHORS   Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2003) Dept. Of Pathology, The Johns Hopkins
	    Medical Institutions, 720 Rutland Ave. Ross Bldg. Room 646,
	    Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="779"
		     /db_xref="taxon:11676"
		     /clone="146631-A"
		     /country="Uganda"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAR11624.1"
		     /db_xref="GI:38146503"
		     /translation="PQITLWQRPLVTVKIGGQQKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRLKNPE
		     IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYAGIKIRQLCKCIRGTKALTEVV
		     PLTEEAELELAENREILKEPVHGVYYDSSKDLIAEIQKQGQD"
BASE COUNT	525 a	 210 c	  273 g    292 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccccta gtcacagtaa agataggggg acagcaaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat 
     181 caaatacttg tagaaatttg tggacataaa gctataggta cggtattggt aggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaatttccca 
     301 attagtccta tagagactgt accagtaaaa ttaaaaccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagmaatttg tacagaaatg 
     421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc cttataatac cccaatattt 
     481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat 
     541 aaragaactc aagacttctg ggaagttcaa ctaggaatac cacatcccgc agggctaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 gaaggcttta gaaagtatac tgcattcacc atacctagta caaacaatga gacaccagga 
     721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccag 
     781 tatagcatga caaaaatctt agagcccttt agattaaaaa acccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatca gacttagaaa tagggcagca tagaataaaa 
     901 atagaggaat taagggaaca cctattgaag tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatag aactgccaga aaaagaaagc tggactgtca atgatataca gaagctagtg 
    1081 gggaaattaa actgggcaag ccagatttat gcaggaatta aaataagaca attatgcaaa 
    1141 tgcattaggg gaaccaaagc attgacagaa gtagtaccac tgacagaaga agcagaatta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgactca 
    1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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