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LOCUS	    AY428689		    1301 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 512 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AY428689
VERSION     AY428689.1 GI:38146436
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1301)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Comparison of nevirapine (NVP) resistance in Ugandan women 7 days
	    vs. 6-8 weeks after single-dose nvp prophylaxis: HIVNET 012
  JOURNAL   AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004)
  PUBMED    15242535
REFERENCE   2 (bases 1 to 1301)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Distinct patterns of emergence and fading of K103N and Y181C in
	    women with subtype A vs. D after single-dose nevirapine: HIVNET 012
  JOURNAL   J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
  PUBMED    16123677
REFERENCE   3 (bases 1 to 1301)
            Show all sequences for reference 3
  AUTHORS   Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2003) Dept. Of Pathology, The Johns Hopkins
	    Medical Institutions, 720 Rutland Ave. Ross Bldg. Room 646,
	    Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1301
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="512"
		     /db_xref="taxon:11676"
		     /clone="130722-T"
		     /country="Uganda"
     gene	     <1..>1301
		     /gene="pol"
     CDS	     <1..>1301
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAR11591.1"
		     /db_xref="GI:38146437"
		     /translation="PQITLWQRPLVTVKIGGHLKEALLDTGADDTVLEEIXLPGKWKP
		     KMIGGIGGFIKVRQYDQICVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGXDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LYEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     MVIYQYMDDLYVGSDLEIGQHRIKIEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKCLRGAKALTEVI
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ"
BASE COUNT	521 a	 204 c	  269 g    296 t     11 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa agataggggg acatctaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataar tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat 
     181 caaatatgtg tagaaatctg tggacataaa gctataggta cagtcttagt rggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg acycagattg gttgyacttt aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag ggayggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatcttt 
     481 gccataaaga aaaaagacag tactaagtgg agaaarttag tagattttag agaacttaat 
     541 aagagaaccc aagacttttg ggaagttcaa ctaggaatac cacatcctgc agggctaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttatat 
     661 gaagacttta gaaagtacac tgcattcacc atacctagta taaacaatga gacaccagga 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat ggttatytat 
     841 caatacatgg atgatttgta tgtaggatct gacytagaaa tagggcagca tagaataaaa 
     901 atagaggaat taagggraca cctattaaag tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatgggg tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa aactgccaga aaaggaaagc tggactgtca atgatataca gaagytagtg 
    1081 gggaaattaa attgggcaag ccagatttat ccaggaatta argtaaaaca attatgtaaa 
    1141 tgccttaggg gagccaaagc actgacagaa gtaataccac tgacagaaga agcagaattg 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caaggacaag a
//
last modified: Tue May 31 10:56 2022


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