View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AY428689 1301 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 512 from Uganda pol protein (pol) gene, partial cds
ACCESSION AY428689
VERSION AY428689.1 GI:38146436
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1301)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Comparison of nevirapine (NVP) resistance in Ugandan women 7 days
vs. 6-8 weeks after single-dose nvp prophylaxis: HIVNET 012
JOURNAL AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004)
PUBMED 15242535
REFERENCE 2 (bases 1 to 1301)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Distinct patterns of emergence and fading of K103N and Y181C in
women with subtype A vs. D after single-dose nevirapine: HIVNET 012
JOURNAL J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
PUBMED 16123677
REFERENCE 3 (bases 1 to 1301)
Show all sequences for reference 3
AUTHORS Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2003) Dept. Of Pathology, The Johns Hopkins
Medical Institutions, 720 Rutland Ave. Ross Bldg. Room 646,
Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1301
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="512"
/db_xref="taxon:11676"
/clone="130722-T"
/country="Uganda"
gene <1..>1301
/gene="pol"
CDS <1..>1301
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAR11591.1"
/db_xref="GI:38146437"
/translation="PQITLWQRPLVTVKIGGHLKEALLDTGADDTVLEEIXLPGKWKP
KMIGGIGGFIKVRQYDQICVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGXDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LYEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
MVIYQYMDDLYVGSDLEIGQHRIKIEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKCLRGAKALTEVI
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ"
BASE COUNT 521 a 204 c 269 g 296 t 11 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa agataggggg acatctaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataar tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat
181 caaatatgtg tagaaatctg tggacataaa gctataggta cagtcttagt rggacctaca
241 cctgtcaaca taattggaag aaatttgttg acycagattg gttgyacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag ggayggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatcttt
481 gccataaaga aaaaagacag tactaagtgg agaaarttag tagattttag agaacttaat
541 aagagaaccc aagacttttg ggaagttcaa ctaggaatac cacatcctgc agggctaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttatat
661 gaagacttta gaaagtacac tgcattcacc atacctagta taaacaatga gacaccagga
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat ggttatytat
841 caatacatgg atgatttgta tgtaggatct gacytagaaa tagggcagca tagaataaaa
901 atagaggaat taagggraca cctattaaag tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatgggg tatgaactcc atcctgataa atggacagta
1021 cagcctataa aactgccaga aaaggaaagc tggactgtca atgatataca gaagytagtg
1081 gggaaattaa attgggcaag ccagatttat ccaggaatta argtaaaaca attatgtaaa
1141 tgccttaggg gagccaaagc actgacagaa gtaataccac tgacagaaga agcagaattg
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caaggacaag a
//
last modified: Tue May 31 10:56 2022