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LOCUS	    AY348415		     597 bp    RNA     linear	VRL 15-APR-2004
DEFINITION  HIV-1 isolate p7p087 clone 7 from USA envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   AY348415
VERSION     AY348415.1 GI:33590783
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 597)
            Show all sequences for reference 1
  AUTHORS   Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
	    Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
	    He,X., Huang,X.-L. and Mullins,J.I.
  TITLE     Consistent viral evolutionary changes associated with the
	    progression of human immunodeficiency virus type 1 infection
  JOURNAL   J. Virol. 73 (12), 10489-10502 (1999)
  PUBMED    10559367
REFERENCE   2 (bases 1 to 597)
            Show all sequences for reference 2
  AUTHORS   Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
	    Margolick,J.B. and Mullins,J.I.
  TITLE     Influence of Random Genetic Drift on Human Immunodeficiency Virus
	    Type 1 env Evolution During Chronic Infection
  JOURNAL   Genetics 166 (3), 1155-1164 (2004)
  PUBMED    15082537
REFERENCE   3 (bases 1 to 597)
            Show all sequences for reference 3
  AUTHORS   Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
	    Margolick,J.B. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2003) Department of Microbiology, University of
	    Washington, Box 358070, Seattle, WA 98195-8070, USA
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
	    He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
	    Mullins,J.I.
  CONSRTM   Multicenter AIDS Cohort Study
  TITLE     Improved Coreceptor Usage Prediction and Genotypic Monitoring of
	    R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
	    Virus Type 1 env V3 Loop Sequences
  JOURNAL   J. Virol. 77 (24), 13376-13388 (2003)
  PUBMED    14645592
COMMENT     Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
	    the 3-digit number in each sample name is months
	    post-seroconversion. Sampling years are estimated based on
	    enrollment in 1983-84 incremented by months post-seroconversion.
	    Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES             Location/Qualifiers
     source	     1..597
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="p7p087"
		     /db_xref="taxon:11676"
		     /clone="7"
		     /country="USA"
     gene	     <1..>597
		     /gene="env"
		     /note="gp120"
     CDS	     <1..>597
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAQ22854.1"
		     /db_xref="GI:33590784"
		     /translation="EKDVVIRSENFTNNAKTIIVQLKESVIINCTRYNNNTRKSIHIG
		     PGRAFYATEDVVGNIRQAHCNISRTKWNNTLKQIVKKLQEQFGNKTIIFKQSSGGDPE
		     IVMHSFNCGGEFFYCNTTELFNSTWEFNSTWNGTTEPDSNITLPCRIKQIISRWQEVG
		     KAMYAPPIKGLINCPSNITGLLLTRDGGKNNTNETFRPG"
BASE COUNT	247 a	  95 c	  116 g    139 t
ORIGIN
       1 gaaaaagatg tagtaattag atctgaaaat ttcacaaaca atgctaaaac cataatagta 
      61 cagctgaagg agtctgtaat aattaattgt acaagataca acaacaatac aagaaaaagt 
     121 atacacatag gaccagggag agcattttat gcaacagaag acgtagtagg aaatataaga 
     181 caagcacatt gtaacattag tagaacaaaa tggaataaca ctttaaagca gatagttaaa 
     241 aaattacaag aacaatttgg gaataaaaca ataatcttta agcaatcctc aggaggggac 
     301 ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg taatacaaca 
     361 gagctgttta acagtacttg ggagtttaac agtacttgga atggtaccac agagccagat 
     421 agcaatatca cactcccatg cagaataaaa caaattataa gcaggtggca ggaagtagga 
     481 aaagcaatgt atgcccctcc catcaaagga ttaattaact gtccctcaaa tattacaggg 
     541 ctgttattaa caagagatgg tggtaagaac aacaccaacg agacctttag acctgga
//
last modified: Tue May 31 10:56 2022


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