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LOCUS	    AY305969		     297 bp    DNA     linear	VRL 28-OCT-2003
DEFINITION  HIV-1 isolate CA9991-2000 from USA protease (pol) gene, partial cds
ACCESSION   AY305969
VERSION     AY305969.1 GI:32250872
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.Y., Rhee,S.-Y.
	    and Shafer,R.W.
  TITLE     Protease and reverse transcriptase mutation patterns in HIV type 1
	    isolates from heavily treated persons: comparison of isolates from
	    Northern California with isolates from other regions
  JOURNAL   AIDS Res. Hum. Retroviruses 19 (10), 909-915 (2003)
  PUBMED    14601580
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.-Y. and
	    Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2003) Department of Medicine/Div. of Infectious
	    Diseases, Stanford University, 300 Pasteur Drive, Grant Bldg, Room
	    S-156, Stanford, CA 94350-5107, USA
COMMENT     The researchers analyzed HIV-1 protease and RT sequences of
	    isolates from heavily treated persons with detectable plasma HIV-1
	    RNA who were receiving antiretroviral therapy. Analysis was
	    restricted to protease sequences (positions 10–90) from persons
	    treated with three or more protease inhibitors and RT sequences
	    (positions 40–240) from persons treated with four or more
	    nucleoside RT inhibitors.
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CA9991-2000"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAP74293.1"
		     /db_xref="GI:32250873"
		     /translation="PQITLWQRPXVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KLIGGIGGFVKVRQYDQIPVEICGHKAIGTVLIGPTPANIIGRNLMTQIGCTLNF"
BASE COUNT	107 a	  51 c	   68 g     70 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccmtc gtcacaataa aggtaggggg acaactaaag 
      61 gaggctctat tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaattgat agggggaatt ggaggttttg tcaaagtaag acagtatgat 
     181 cagatacccg tagaaatctg cggacataaa gctataggta cagtattaat aggacctaca 
     241 cctgccaaca taattggaag aaatctgatg actcagattg gctgcacttt aaatttt
//
last modified: Tue May 31 10:56 2022


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