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LOCUS AY305969 297 bp DNA linear VRL 28-OCT-2003
DEFINITION HIV-1 isolate CA9991-2000 from USA protease (pol) gene, partial cds
ACCESSION AY305969
VERSION AY305969.1 GI:32250872
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 297)
Show all sequences for reference 1
AUTHORS Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.Y., Rhee,S.-Y.
and Shafer,R.W.
TITLE Protease and reverse transcriptase mutation patterns in HIV type 1
isolates from heavily treated persons: comparison of isolates from
Northern California with isolates from other regions
JOURNAL AIDS Res. Hum. Retroviruses 19 (10), 909-915 (2003)
PUBMED 14601580
REFERENCE 2 (bases 1 to 297)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.-Y. and
Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2003) Department of Medicine/Div. of Infectious
Diseases, Stanford University, 300 Pasteur Drive, Grant Bldg, Room
S-156, Stanford, CA 94350-5107, USA
COMMENT The researchers analyzed HIV-1 protease and RT sequences of
isolates from heavily treated persons with detectable plasma HIV-1
RNA who were receiving antiretroviral therapy. Analysis was
restricted to protease sequences (positions 1090) from persons
treated with three or more protease inhibitors and RT sequences
(positions 40240) from persons treated with four or more
nucleoside RT inhibitors.
FEATURES Location/Qualifiers
source 1..297
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CA9991-2000"
/db_xref="taxon:11676"
/country="USA"
gene <1..>297
/gene="pol"
CDS <1..>297
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="protease"
/protein_id="AAP74293.1"
/db_xref="GI:32250873"
/translation="PQITLWQRPXVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKP
KLIGGIGGFVKVRQYDQIPVEICGHKAIGTVLIGPTPANIIGRNLMTQIGCTLNF"
BASE COUNT 107 a 51 c 68 g 70 t 1 other
ORIGIN
1 cctcaaatca ctctttggca acgacccmtc gtcacaataa aggtaggggg acaactaaag
61 gaggctctat tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaattgat agggggaatt ggaggttttg tcaaagtaag acagtatgat
181 cagatacccg tagaaatctg cggacataaa gctataggta cagtattaat aggacctaca
241 cctgccaaca taattggaag aaatctgatg actcagattg gctgcacttt aaatttt
//
last modified: Tue May 31 10:56 2022