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LOCUS AY305918 885 bp DNA linear VRL 18-APR-2005
DEFINITION HIV-1 isolate CA1342-2000 from USA reverse transcriptase (pol)
gene, partial cds
ACCESSION AY305918
VERSION AY305918.1 GI:32250770
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 885)
Show all sequences for reference 1
AUTHORS Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.Y., Rhee,S.-Y.
and Shafer,R.W.
TITLE Protease and reverse transcriptase mutation patterns in HIV type 1
isolates from heavily treated persons: comparison of isolates from
Northern California with isolates from other regions
JOURNAL AIDS Res. Hum. Retroviruses 19 (10), 909-915 (2003)
PUBMED 14601580
REFERENCE 2 (bases 1 to 885)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.-Y. and
Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2003) Department of Medicine/Div. of Infectious
Diseases, Stanford University, 300 Pasteur Drive, Grant Bldg, Room
S-156, Stanford, CA 94350-5107, USA
COMMENT The researchers analyzed HIV-1 protease and RT sequences of
isolates from heavily treated persons with detectable plasma HIV-1
RNA who were receiving antiretroviral therapy. Analysis was
restricted to protease sequences (positions 1090) from persons
treated with three or more protease inhibitors and RT sequences
(positions 40240) from persons treated with four or more
nucleoside RT inhibitors.
FEATURES Location/Qualifiers
source 1..885
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CA1342-2000"
/db_xref="taxon:11676"
/country="USA"
gene <1..>885
/gene="pol"
CDS <1..>885
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAP74242.1"
/db_xref="GI:32250771"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAELEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPXINNETPGVRYQYNVLPQGWXGSPXIF
QSSMTKILEPFRKQNPXIVIYQYVDDLYVGSDLEIGQHRTKIEELRQHLLRWGFFTPX
KKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
KQLCKLLRGTKALTEXVPL"
BASE COUNT 339 a 142 c 184 g 205 t 15 other
ORIGIN
1 cccattagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaaa
61 gttaaacaat ggccattgac agaggaaaaa ataaaagcat tagtagaaat ttgtgcagaa
121 ttggaaaagg aagggaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagtt
181 tttgccataa agaaaaagga cagtactaaa tggagaaaat tagtagattt cagagaactt
241 aataagagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcrgggtta
301 aaaaagaaaa aatcagtaac agtgctggat gtgggtgatg catatttttc agttccctta
361 gatgaagact tcaggaagta tactgcattt accataccta gkataaacaa tgagacacca
421 ggggttagat atcagtacaa tgtgctccca cagggatggr aaggatcacc akcaatattc
481 caaagtagca tgacaaaaat cttagagcct tttagaaaac aaaatccaga satagttatc
541 tatcaatayg tggatgattt gtatgtagga tctgacttag aaataggaca gcatagaaca
601 aaaatagagg aactgagaca acatttgttg aggtggggat tyttyacacc agasaaaaaa
661 catcagaaag aacctccatt cctttggatg ggttatgaac tccatcctga taaatggaca
721 gtacagccca tagtgctgcc agaaaaagac agctggactg tcaatgacat acagaagtta
781 gtgggaaaat tgaattgggc magtcagatt tayccrggga ttaaagtaaa gcaattatgt
841 aagctcctta ggggaaccaa agcaytaaca gaartagtrc cacta
//
last modified: Tue May 31 10:56 2022