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LOCUS	    AY282100		     390 bp    DNA     linear	VRL 16-DEC-2004
DEFINITION  HIV-1 clone SUMA020-047 gag protein (gag) gene, partial cds
ACCESSION   AY282100
VERSION     AY282100.1 GI:34421426
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 390)
            Show all sequences for reference 1
  AUTHORS   Jones,N.A., Wei,X., Flower,D.R., Wong,M., Michor,F., Saag,M.S.,
	    Hahn,B.H., Nowak,M.A., Shaw,G.M. and Borrow,P.
  TITLE     Determinants of human immunodeficiency virus type 1 escape from the
	    primary CD8+ cytotoxic T lymphocyte response
  JOURNAL   J. Exp. Med. 200 (10), 1243-1256 (2004)
  PUBMED    15545352
REFERENCE   2 (bases 1 to 390)
            Show all sequences for reference 2
  AUTHORS   Jones,N.A., Wei,X., Flower,D.R., Wong,M., Michor,F., Saag,M.S.,
	    Hahn,B.H., Nowak,M.A., Shaw,G.M. and Borrow,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2003) The Edward Jemmer Institute for Vaccine
	    Research, Copton, Newbury, Berkshire RG20 7NN, UK
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Decker,J.M., Bibollet-Ruche,F., Wei,X., Wang,S., Levy,D.N.,
	    Wang,W., Delaporte,E., Peeters,M., Derdeyn,C.A., Allen,S.,
	    Hunter,E., Saag,M.S., Hoxie,J.A., Hahn,B.H., Kwong,P.D.,
	    Robinson,J.E. and Shaw,G.M.
  TITLE     Antigenic conservation and immunogenicity of the HIV coreceptor
	    binding site
  JOURNAL   J. Exp. Med. 201 (9), 1407-1419 (2005)
  PUBMED    15867093
COMMENT     For sequences from this patient, the first number in the sequence
	    name indicates the number of days since onset of symptoms; this
	    number was used as the basis of days post-seroconversion.
FEATURES             Location/Qualifiers
     source	     1..390
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11676"
		     /clone="SUMA020-047"
		     /note="clones are labeled as patientxxx-yyy, where xxx is
		     the number of days after DFOSx and yyy is the clone
		     number"
     gene	     <1..>390
		     /gene="gag"
     CDS	     <1..>390
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AAQ67951.1"
		     /db_xref="GI:34421427"
		     /translation="MGARASVLSGGELDRWEKIRLRPGGKKKYQLKHIVWASRELERF
		     AVNPGLLEASEGCRQILGQLQPALQTGSEELKSLYNAVATLYCVHQKIDVKDTKEALD
		     KIEEEQNKSKKKAQQAAADAGNNSQVSQ"
BASE COUNT	157 a	  65 c	  100 g     68 t
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg 
      61 ttaaggccag ggggaaagaa aaaatatcaa ttaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagttaa ccctggcctg ttagaagcat cagaaggatg tagacaaata 
     181 ctgggacagc tacaaccagc ccttcagaca ggatcagaag aacttaaatc attatataat 
     241 gcagtagcga ccctctattg tgtgcatcaa aagatagatg taaaagatac caaggaagct 
     301 ttagataaga tagaggaaga gcaaaacaaa agtaagaaaa aagcacagca agcagcagct 
     361 gacgcaggaa acaacagcca ggtcagccaa 
//
last modified: Tue May 31 10:56 2022


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