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LOCUS AY275771 966 bp RNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 144PR_RT from Brazil pol protein (pol) gene, partial
cds
ACCESSION AY275771
VERSION AY275771.1 GI:34595867
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 966)
Show all sequences for reference 1
AUTHORS Santos,A.F., Sousa,T.M., Soares,E.A., Sanabani,S., Martinez,A.M.,
Sprinz,E., Silveira,J., Sabino,E.C., Tanuri,A. and Soares,M.A.
TITLE Characterization of a new circulating recombinant form comprising
HIV-1 subtypes C and B in southern Brazil
JOURNAL AIDS 20 (16), 2011-2019 (2006)
PUBMED 17053347
REFERENCE 2 (bases 1 to 966)
Show all sequences for reference 2
AUTHORS Soares,E.A.J.M., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A.
and Soares,M.A.
TITLE Direct Submission
JOURNAL Submitted (15-APR-2003) Genetica, Universidade Federal do Rio de
Janeiro, CCS Bloco A - sala A2-121 - Cidade Universitaria - Ilha do
Fundao, Rio de Janeiro, RJ 21944-970, Brazil
REFERENCE 3
Show all sequences for reference 3
AUTHORS Soares,E.A., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A. and
Soares,M.A.
TITLE Epidemiologic and molecular characterization of human
immunodeficiency virus type 1 in southern Brazil.
JOURNAL J. Acquir. Immune Defic. Syndr. 34 (5), 520-6 (2003)
PUBMED 14657764
REFERENCE 4
Show all sequences for reference 4
AUTHORS Soares,E.A.J.M., Santos,A.F.A., Sousa,T.M., Sprinz,E.,
Martinez,A.M.B., Silveira,J., Tanuri,A. and Soares,M.A.
TITLE Differential drug resistance acquisition in HIV-1 of subtypes B and
C.
JOURNAL PLoS. ONE.. 2(1); e730 (2007)
PUBMED 17710130
FEATURES Location/Qualifiers
source 1..966
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="144PR_RT"
/isolation_source="patient 144"
/db_xref="taxon:11676"
/country="Brazil"
gene <1..>966
/gene="pol"
CDS <1..>966
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAQ76655.1"
/db_xref="GI:34595868"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMDLPGKWKP
KMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALAEICTDMEKEGKISRIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRTKNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLQWGFPTPDKKHQK"
BASE COUNT 378 a 159 c 201 g 228 t
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacaataa aaataggggg acagttaaag
61 gaagctctct tagatacagg agcagatgat acagtattag aagacatgga tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acaatatgat
181 caagtaccca tagaaatttg tggacacaag gctataggta cagtgttaat aggacctacg
241 cctgtcaaca taattggaag aaacatgttg actcagcttg gttgtacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga ggaaaaaata aaagcattag cagaaatttg tacagatatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg aggaaattag tagatttcag agaacttaat
541 aaaagaactc aagatttttg ggaggtgcaa ttaggaatac cacaccctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcccttagat
661 aaagatttca ggaagtacac tgcattcacc atacccagta tcaacaatga gacaccagga
721 attaggtacc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatctt agatcccttt agaacaaaaa atccagacat agttatctac
841 caatacatgg atgatttgta tgtagggtct gatttagaaa tagggcagca tagagcaaaa
901 atagaggagt taagagaaca tctactgcaa tggggatttc ctacaccaga caaaaaacat
961 caaaag
//
last modified: Tue May 31 10:56 2022