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LOCUS AY275764 972 bp RNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 108PR_RT from Brazil pol protein (pol) gene, partial
cds
ACCESSION AY275764
VERSION AY275764.1 GI:34595853
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 972)
Show all sequences for reference 1
AUTHORS Santos,A.F., Sousa,T.M., Soares,E.A., Sanabani,S., Martinez,A.M.,
Sprinz,E., Silveira,J., Sabino,E.C., Tanuri,A. and Soares,M.A.
TITLE Characterization of a new circulating recombinant form comprising
HIV-1 subtypes C and B in southern Brazil
JOURNAL AIDS 20 (16), 2011-2019 (2006)
PUBMED 17053347
REFERENCE 2 (bases 1 to 972)
Show all sequences for reference 2
AUTHORS Soares,E.A.J.M., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A.
and Soares,M.A.
TITLE Direct Submission
JOURNAL Submitted (15-APR-2003) Genetica, Universidade Federal do Rio de
Janeiro, CCS Bloco A - sala A2-121 - Cidade Universitaria - Ilha do
Fundao, Rio de Janeiro, RJ 21944-970, Brazil
REFERENCE 3
Show all sequences for reference 3
AUTHORS Soares,E.A., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A. and
Soares,M.A.
TITLE Epidemiologic and molecular characterization of human
immunodeficiency virus type 1 in southern Brazil.
JOURNAL J. Acquir. Immune Defic. Syndr. 34 (5), 520-6 (2003)
PUBMED 14657764
REFERENCE 4
Show all sequences for reference 4
AUTHORS Soares,E.A.J.M., Santos,A.F.A., Sousa,T.M., Sprinz,E.,
Martinez,A.M.B., Silveira,J., Tanuri,A. and Soares,M.A.
TITLE Differential drug resistance acquisition in HIV-1 of subtypes B and
C.
JOURNAL PLoS. ONE.. 2(1); e730 (2007)
PUBMED 17710130
FEATURES Location/Qualifiers
source 1..972
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="108PR_RT"
/isolation_source="patient 108"
/db_xref="taxon:11676"
/country="Brazil"
gene <1..>972
/gene="pol"
CDS <1..>972
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAQ76648.1"
/db_xref="GI:34595854"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
KMIGGIGGFIKVRQYDQVLIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEP"
BASE COUNT 390 a 160 c 194 g 228 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaattaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcaatatgat
181 caggtactca tagaaatctg tggacataaa gctataggca cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaagagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagacttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttacat
661 gaagatttca gaaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatttt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcaaca tagaacaaaa
901 atagaggaac taagacaaca tctgttgaag tggggactta ccaccccaga caaaaaacat
961 cagaaagaac ct
//
last modified: Tue May 31 10:56 2022