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LOCUS	    AY275764		     972 bp    RNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 108PR_RT from Brazil pol protein (pol) gene, partial
	    cds
ACCESSION   AY275764
VERSION     AY275764.1 GI:34595853
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 972)
            Show all sequences for reference 1
  AUTHORS   Santos,A.F., Sousa,T.M., Soares,E.A., Sanabani,S., Martinez,A.M.,
	    Sprinz,E., Silveira,J., Sabino,E.C., Tanuri,A. and Soares,M.A.
  TITLE     Characterization of a new circulating recombinant form comprising
	    HIV-1 subtypes C and B in southern Brazil
  JOURNAL   AIDS 20 (16), 2011-2019 (2006)
  PUBMED    17053347
REFERENCE   2 (bases 1 to 972)
            Show all sequences for reference 2
  AUTHORS   Soares,E.A.J.M., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A.
	    and Soares,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2003) Genetica, Universidade Federal do Rio de
	    Janeiro, CCS Bloco A - sala A2-121 - Cidade Universitaria - Ilha do
	    Fundao, Rio de Janeiro, RJ 21944-970, Brazil
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Soares,E.A., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A. and
	    Soares,M.A.
  TITLE     Epidemiologic and molecular characterization of human
	    immunodeficiency virus type 1 in southern Brazil.
  JOURNAL   J. Acquir. Immune Defic. Syndr. 34 (5), 520-6 (2003)
  PUBMED    14657764
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Soares,E.A.J.M., Santos,A.F.A., Sousa,T.M., Sprinz,E.,
	    Martinez,A.M.B., Silveira,J., Tanuri,A. and Soares,M.A.
  TITLE     Differential drug resistance acquisition in HIV-1 of subtypes B and
	    C.
  JOURNAL   PLoS. ONE.. 2(1); e730 (2007)
  PUBMED    17710130
FEATURES             Location/Qualifiers
     source	     1..972
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="108PR_RT"
		     /isolation_source="patient 108"
		     /db_xref="taxon:11676"
		     /country="Brazil"
     gene	     <1..>972
		     /gene="pol"
     CDS	     <1..>972
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAQ76648.1"
		     /db_xref="GI:34595854"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
		     KMIGGIGGFIKVRQYDQVLIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEP"
BASE COUNT	390 a	 160 c	  194 g    228 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaattaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcaatatgat 
     181 caggtactca tagaaatctg tggacataaa gctataggca cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaagagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagacttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttacat 
     661 gaagatttca gaaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatttt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcaaca tagaacaaaa 
     901 atagaggaac taagacaaca tctgttgaag tggggactta ccaccccaga caaaaaacat 
     961 cagaaagaac ct
//
last modified: Tue May 31 10:56 2022


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