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LOCUS AY223762 2568 bp RNA linear VRL 11-JUN-2003
DEFINITION HIV-1 envelope glycoprotein (env) gene, complete cds
ACCESSION AY223762
VERSION AY223762.1 GI:31581912
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2568)
Show all sequences for reference 1
AUTHORS Wei,X., Decker,J.M., Wang,S., Hui,H., Kappes,J.C., Wu,X.,
Salazar-Gonzalez,J.F., Salazar,M.G., Kilby,J.M., Saag,M.S.,
Komarova,N.L., Nowak,M.A., Hahn,B.H., Kwong,P.D. and Shaw,G.M.
TITLE Antibody neutralization and escape by HIV-1
JOURNAL Nature 422 (6929), 307-312 (2003)
PUBMED 12646921
REFERENCE 2 (bases 1 to 2568)
Show all sequences for reference 2
AUTHORS Wei,X. and Shaw,G.M.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2003) Medicine, HHMI, University of Alabama at
Birmingham, 720 South 20th Street, Kaul 816, Birmingham, AL
35294-0024, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Decker,J.M., Bibollet-Ruche,F., Wei,X., Wang,S., Levy,D.N.,
Wang,W., Delaporte,E., Peeters,M., Derdeyn,C.A., Allen,S.,
Hunter,E., Saag,M.S., Hoxie,J.A., Hahn,B.H., Kwong,P.D.,
Robinson,J.E. and Shaw,G.M.
TITLE Antigenic conservation and immunogenicity of the HIV coreceptor
binding site
JOURNAL J. Exp. Med. 201 (9), 1407-1419 (2005)
PUBMED 15867093
FEATURES Location/Qualifiers
source 1..2568
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolation_source="plasma from patient SUMA"
/db_xref="taxon:11676"
/clone="SUMA4-03"
/note="clones are labeled as follows: SUMAxxx-yyy, where
xxx indicate the number of days after onset of symptoms
and yyy the clone number"
gene 1..2568
/gene="env"
CDS 1..2568
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAP57357.1"
/db_xref="GI:31581913"
/translation="MKVKGIRKNYFWRWGILLLGMLMICSATENLWVTVYYGVPVWKE
ATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMH
EHIISLWDQSLQPCVRLTPLCVTLNCTDYVKNVTNATSTNATSSEGGEMKNCPFNVTT
NMRDKKQKEYALFYNLDIVQIDNDNANNSYRLISCNTSVITQACPKVSFEPIPIHYCA
PAGFAILRCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSKNF
TNNANIIIVQLNDSVEINCTRPNNNTRKSIPIGPGRAFYTTGEIIGDIRQAHCNISKS
KWNDTLQQIVKKLREQFKNKTIVFTHSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTW
YINNTGNGAKGSDNTDTIKLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLIL
TRDGGNNNDTNNDTEVFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRE
KRAVGIGALFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQ
LTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDN
MTWMQWEKEIDNYTSLIYTLLEQSQNQQEKNEQELLELDKWASLWNWFGITNWLWYIK
IFIMIVGGLVGLRIVFTVLSIVNRVRQGYSPLSFQTRLPVPRGPDRPEGIEEEGGDRD
RDRSSRSVDGFLALIWEDLRSLCLLSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNL
LQYWSQELKSSAVSLLNATAIAVAEGTDRIIEGLQRAFRAILNIPTRIRQGLERALL"
BASE COUNT 900 a 442 c 589 g 637 t
ORIGIN
1 atgaaagtga aggggatcag gaagaattac ttttggagat ggggcatctt gctccttggg
61 atgttaatga tctgtagtgc tacagaaaat ttgtgggtca cagtctatta tggagtacct
121 gtgtggaaag aagcaaccac cactctattt tgtgcatcag atgctaaagc atatgataca
181 gaagtacata acgtttgggc cacacatgcc tgtgtaccca cagaccccaa cccacaagaa
241 gtagtattgg aaaatgtgac agaaaacttt aacatgtgga aaaataacat ggtagaacag
301 atgcatgagc atataatcag tttatgggat caaagcctac aaccatgtgt aagattaact
361 ccactctgtg ttactttaaa ttgcactgat tatgtcaaga atgttactaa tgccactagt
421 actaatgcca ctagtagcga gggaggagaa atgaaaaact gccctttcaa tgtcaccaca
481 aacatgagag ataagaagca aaaagaatat gcactttttt ataaccttga tatagtacaa
541 atagataatg ataatgctaa taacagctat aggttgataa gttgtaacac ctcagtcatt
601 acacaggcct gtccaaaggt atcctttgag ccaattccca tacattattg tgccccggct
661 ggttttgcga ttctaaggtg taatgataag aagttcaatg gaacaggacc atgtacaaat
721 gtcagcacag tacaatgtac acatggaatc aggccagtag tatctactca actgctgtta
781 aatggcagtc tagcagaaga agaagtagta attagatcta aaaatttcac gaacaatgct
841 aacatcataa tagtacagct gaatgactct gtagaaatta attgtacaag acccaacaac
901 aatacaagaa aaagtatacc tataggacca gggagagcat tttatacaac aggagaaata
961 ataggagata taagacaagc acattgtaac attagtaaaa gcaaatggaa tgacacttta
1021 caacaaatag ttaaaaaatt aagagaacaa tttaagaata aaacaatagt ctttactcat
1081 tcctcaggag gggacccaga aattgtaatg cacagtttta attgtggagg ggaatttttc
1141 tattgtaata caacacaact gtttaatagt acttggtata ttaataatac tgggaatggt
1201 gctaaagggt cagataacac tgacactatc aaactcccat gcagaataaa acaaattata
1261 aacatgtggc aggaggtagg aaaagcaatg tatgcccctc ccatcagagg acaaattaga
1321 tgttcctcaa atattacagg actgatatta acaagagatg ggggtaataa caatgatacc
1381 aacaatgata ccgaggtctt cagacctgga ggaggagata tgagagacaa ttggagaagt
1441 gaattatata aatataaagt agtaaaaatt gaaccattag gagtagcacc cactaaggca
1501 aagagaagag tggtgcagag agaaaaaaga gcagtgggaa taggagcctt gttccttggg
1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcag tgacgctgac ggtacaggcc
1621 agacaattgt tgtctggtat agtgcaacag cagaacaatt tgctgaaggc tattgaggcg
1681 caacagcatc tgttgcaact cacagtctgg ggcatcaaac agctccaggc aagagtcctg
1741 gctgtagaaa gatacctaaa ggatcaacag ctcctgggaa tttggggttg ctctggaaaa
1801 ctcatctgca ccactgctgt gccttggaat gctagttgga gtaataaatc tctgaacgag
1861 atctgggata acatgacctg gatgcagtgg gaaaaagaaa ttgacaatta cacaagttta
1921 atatacacct tacttgaaca atcgcaaaac caacaagaaa agaatgaaca agagttattg
1981 gaattggata aatgggcaag tttgtggaat tggtttggca taacaaattg gctgtggtat
2041 ataaaaatat tcataatgat agtaggaggc ttggtaggtt taagaatagt ttttactgta
2101 ctttctatag taaatagagt taggcaggga tattcaccat tatcgttcca gacccgcctc
2161 ccagttccga ggggacccga caggcccgaa ggaatcgaag aagaaggtgg agacagagac
2221 agagacagat ccagtcgctc agtggatgga ttcttagcac tcatctggga agacctgcgg
2281 agcctgtgcc tcctcagcta ccaccgcttg agagacttac tattgattgt aacgaggatt
2341 gtggaacttc tgggacgcag ggggtgggaa ctcctcaaat attggtggaa tcttctacag
2401 tattggagtc aggaactaaa gagtagtgct gttagtttgc ttaatgccac agctatagca
2461 gtagctgagg ggacagatag gattatagaa ggattacaaa gagcttttag agctattctc
2521 aacataccta caagaataag acagggcttg gaaagggctt tactataa
//
last modified: Tue May 31 10:56 2022