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LOCUS	    AY223762		    2568 bp    RNA     linear	VRL 11-JUN-2003
DEFINITION  HIV-1 envelope glycoprotein (env) gene, complete cds
ACCESSION   AY223762
VERSION     AY223762.1 GI:31581912
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2568)
            Show all sequences for reference 1
  AUTHORS   Wei,X., Decker,J.M., Wang,S., Hui,H., Kappes,J.C., Wu,X.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Kilby,J.M., Saag,M.S.,
	    Komarova,N.L., Nowak,M.A., Hahn,B.H., Kwong,P.D. and Shaw,G.M.
  TITLE     Antibody neutralization and escape by HIV-1
  JOURNAL   Nature 422 (6929), 307-312 (2003)
  PUBMED    12646921
REFERENCE   2 (bases 1 to 2568)
            Show all sequences for reference 2
  AUTHORS   Wei,X. and Shaw,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2003) Medicine, HHMI, University of Alabama at
	    Birmingham, 720 South 20th Street, Kaul 816, Birmingham, AL
	    35294-0024, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Decker,J.M., Bibollet-Ruche,F., Wei,X., Wang,S., Levy,D.N.,
	    Wang,W., Delaporte,E., Peeters,M., Derdeyn,C.A., Allen,S.,
	    Hunter,E., Saag,M.S., Hoxie,J.A., Hahn,B.H., Kwong,P.D.,
	    Robinson,J.E. and Shaw,G.M.
  TITLE     Antigenic conservation and immunogenicity of the HIV coreceptor
	    binding site
  JOURNAL   J. Exp. Med. 201 (9), 1407-1419 (2005)
  PUBMED    15867093
FEATURES             Location/Qualifiers
     source	     1..2568
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolation_source="plasma from patient SUMA"
		     /db_xref="taxon:11676"
		     /clone="SUMA4-03"
		     /note="clones are labeled as follows: SUMAxxx-yyy, where
		     xxx indicate the number of days after onset of symptoms
		     and yyy the clone number"
     gene	     1..2568
		     /gene="env"
     CDS	     1..2568
		     /gene="env"
		     /note="gp160"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAP57357.1"
		     /db_xref="GI:31581913"
		     /translation="MKVKGIRKNYFWRWGILLLGMLMICSATENLWVTVYYGVPVWKE
		     ATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMH
		     EHIISLWDQSLQPCVRLTPLCVTLNCTDYVKNVTNATSTNATSSEGGEMKNCPFNVTT
		     NMRDKKQKEYALFYNLDIVQIDNDNANNSYRLISCNTSVITQACPKVSFEPIPIHYCA
		     PAGFAILRCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSKNF
		     TNNANIIIVQLNDSVEINCTRPNNNTRKSIPIGPGRAFYTTGEIIGDIRQAHCNISKS
		     KWNDTLQQIVKKLREQFKNKTIVFTHSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTW
		     YINNTGNGAKGSDNTDTIKLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLIL
		     TRDGGNNNDTNNDTEVFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRE
		     KRAVGIGALFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQ
		     LTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDN
		     MTWMQWEKEIDNYTSLIYTLLEQSQNQQEKNEQELLELDKWASLWNWFGITNWLWYIK
		     IFIMIVGGLVGLRIVFTVLSIVNRVRQGYSPLSFQTRLPVPRGPDRPEGIEEEGGDRD
		     RDRSSRSVDGFLALIWEDLRSLCLLSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNL
		     LQYWSQELKSSAVSLLNATAIAVAEGTDRIIEGLQRAFRAILNIPTRIRQGLERALL"
BASE COUNT	900 a	 442 c	  589 g    637 t
ORIGIN
       1 atgaaagtga aggggatcag gaagaattac ttttggagat ggggcatctt gctccttggg 
      61 atgttaatga tctgtagtgc tacagaaaat ttgtgggtca cagtctatta tggagtacct 
     121 gtgtggaaag aagcaaccac cactctattt tgtgcatcag atgctaaagc atatgataca 
     181 gaagtacata acgtttgggc cacacatgcc tgtgtaccca cagaccccaa cccacaagaa 
     241 gtagtattgg aaaatgtgac agaaaacttt aacatgtgga aaaataacat ggtagaacag 
     301 atgcatgagc atataatcag tttatgggat caaagcctac aaccatgtgt aagattaact 
     361 ccactctgtg ttactttaaa ttgcactgat tatgtcaaga atgttactaa tgccactagt 
     421 actaatgcca ctagtagcga gggaggagaa atgaaaaact gccctttcaa tgtcaccaca 
     481 aacatgagag ataagaagca aaaagaatat gcactttttt ataaccttga tatagtacaa 
     541 atagataatg ataatgctaa taacagctat aggttgataa gttgtaacac ctcagtcatt 
     601 acacaggcct gtccaaaggt atcctttgag ccaattccca tacattattg tgccccggct 
     661 ggttttgcga ttctaaggtg taatgataag aagttcaatg gaacaggacc atgtacaaat 
     721 gtcagcacag tacaatgtac acatggaatc aggccagtag tatctactca actgctgtta 
     781 aatggcagtc tagcagaaga agaagtagta attagatcta aaaatttcac gaacaatgct 
     841 aacatcataa tagtacagct gaatgactct gtagaaatta attgtacaag acccaacaac 
     901 aatacaagaa aaagtatacc tataggacca gggagagcat tttatacaac aggagaaata 
     961 ataggagata taagacaagc acattgtaac attagtaaaa gcaaatggaa tgacacttta 
    1021 caacaaatag ttaaaaaatt aagagaacaa tttaagaata aaacaatagt ctttactcat 
    1081 tcctcaggag gggacccaga aattgtaatg cacagtttta attgtggagg ggaatttttc 
    1141 tattgtaata caacacaact gtttaatagt acttggtata ttaataatac tgggaatggt 
    1201 gctaaagggt cagataacac tgacactatc aaactcccat gcagaataaa acaaattata 
    1261 aacatgtggc aggaggtagg aaaagcaatg tatgcccctc ccatcagagg acaaattaga 
    1321 tgttcctcaa atattacagg actgatatta acaagagatg ggggtaataa caatgatacc 
    1381 aacaatgata ccgaggtctt cagacctgga ggaggagata tgagagacaa ttggagaagt 
    1441 gaattatata aatataaagt agtaaaaatt gaaccattag gagtagcacc cactaaggca 
    1501 aagagaagag tggtgcagag agaaaaaaga gcagtgggaa taggagcctt gttccttggg 
    1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcag tgacgctgac ggtacaggcc 
    1621 agacaattgt tgtctggtat agtgcaacag cagaacaatt tgctgaaggc tattgaggcg 
    1681 caacagcatc tgttgcaact cacagtctgg ggcatcaaac agctccaggc aagagtcctg 
    1741 gctgtagaaa gatacctaaa ggatcaacag ctcctgggaa tttggggttg ctctggaaaa 
    1801 ctcatctgca ccactgctgt gccttggaat gctagttgga gtaataaatc tctgaacgag 
    1861 atctgggata acatgacctg gatgcagtgg gaaaaagaaa ttgacaatta cacaagttta 
    1921 atatacacct tacttgaaca atcgcaaaac caacaagaaa agaatgaaca agagttattg 
    1981 gaattggata aatgggcaag tttgtggaat tggtttggca taacaaattg gctgtggtat 
    2041 ataaaaatat tcataatgat agtaggaggc ttggtaggtt taagaatagt ttttactgta 
    2101 ctttctatag taaatagagt taggcaggga tattcaccat tatcgttcca gacccgcctc 
    2161 ccagttccga ggggacccga caggcccgaa ggaatcgaag aagaaggtgg agacagagac 
    2221 agagacagat ccagtcgctc agtggatgga ttcttagcac tcatctggga agacctgcgg 
    2281 agcctgtgcc tcctcagcta ccaccgcttg agagacttac tattgattgt aacgaggatt 
    2341 gtggaacttc tgggacgcag ggggtgggaa ctcctcaaat attggtggaa tcttctacag 
    2401 tattggagtc aggaactaaa gagtagtgct gttagtttgc ttaatgccac agctatagca 
    2461 gtagctgagg ggacagatag gattatagaa ggattacaaa gagcttttag agctattctc 
    2521 aacataccta caagaataag acagggcttg gaaagggctt tactataa
//
last modified: Tue May 31 10:56 2022


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