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LOCUS AY156881 793 bp DNA linear VRL 22-OCT-2002
DEFINITION HIV-1 clone V24 from USA envelope glycoprotein (env) gene, partial
cds
ACCESSION AY156881
VERSION AY156881.1 GI:24210231
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 793)
Show all sequences for reference 1
AUTHORS Metzker,M.L., Ansari-Lari,M.A., Liu,X.M., Holder,D.J. and
Gibbs,R.A.
TITLE Quantitation of mixed-base populations of HIV-1 variants by
automated DNA sequencing with BODIPY dye-labeled primers
JOURNAL BioTechniques 25 (3), 446-447 (1998)
PUBMED 9762443
REFERENCE 2 (bases 1 to 793)
Show all sequences for reference 2
AUTHORS Metzker,M.L., Mindell,D.P., Liu,X.M., Ptak,R.G., Gibbs,R.A. and
Hillis,D.M.
TITLE Molecular evidence of HIV-1 transmission in a criminal case.
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14292-7 (2002)
PUBMED 12388776
REFERENCE 3 (bases 1 to 793)
Show all sequences for reference 3
AUTHORS Metzker,M.L., Liu,X.-M. and Gibbs,R.A.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2002) Department of Molecular & Human Genetics,
Baylor College of Medicine, One Baylor Plaza, N1409, Houston, TX
77030, USA
COMMENT There are 174 sequences in this group. A control group comprised of
28 individuals includes 26 env and 25 RT sequences taken in 1995.
Patient samples (66) include 51 env and 7 RT from 1995
(BCM,P01-50), 2 env and 6 RT from 1997 (MIC). Victim samples (57)
include 51 env and 2RT from 1995 (BCM,V01-50), and 2 env and 2 RT
from 1997 (MIC). This was a criminal case where a physician
intentionally infected the "victim" by intramuscular injection of
blood from the "patient". Victim was injected August, 1994 and
was seropositive in January, 1995.
FEATURES Location/Qualifiers
source 1..793
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="whole blood PBMC"
/db_xref="taxon:11676"
/clone="V24"
/country="USA: Lafayette, LA"
gene <1..>793
/gene="env"
CDS <1..>793
/gene="env"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAN41608.1"
/db_xref="GI:24210232"
/translation="IRPTVSTQLLLNGSLAEKEVVIRSENFTNNAKTIIVQLTTPVEI
NCIRPNNNTRKSIPIGPGRALYTTGDIIGNIRKACCNISKAKWNDTLSQVVKKLGQQF
NKTTIVFKQSSGGDPEIAMHSFNCGGEFFYCNTTQLFNSTWNITGGTNITEGTNNMEG
NNTTIILPCRIKQMINMWQEVGKAMHAPPIQGIISCSSNITGLLLTRDGGNGNDTRDN
ETFRPGGGDMKDNWRSELYKYKVVKIEPFGVAPTKAKRRVVQREKR"
BASE COUNT 336 a 125 c 162 g 170 t
ORIGIN
1 aattaggcca acagtatcaa ctcaattact gttaaatggc agtctagcag aaaaagaggt
61 agtaattaga tctgaaaatt tcacgaacaa tgctaaaacc ataatagtgc agctgacaac
121 acctgtagaa attaattgta taagacccaa caacaataca agaaaaagta tacctatagg
181 accagggaga gcactttata caacaggaga cataatagga aatataagaa aagcatgttg
241 taacattagt aaagcaaaat ggaatgacac tctaagccag gtagttaaaa aattaggaca
301 acaatttaat aaaacaacaa tagtctttaa gcaatcctca ggaggggacc cagaaattgc
361 aatgcacagt tttaactgtg gaggggaatt tttctactgt aatacaacac aattgtttaa
421 tagtacctgg aatattactg gaggaacaaa tattactgaa ggaacaaata acatggaagg
481 aaataataca acaatcatac tcccatgcag aataaaacaa atgataaaca tgtggcagga
541 ggtaggaaaa gcaatgcatg ccccgcccat ccaagggata attagctgct catcaaatat
601 tacagggcta ctactaacaa gagatggcgg taatggtaat gacaccagag ataatgagac
661 cttcagacct ggaggaggag atatgaagga caattggaga agtgaattat ataaatataa
721 agtagtaaaa attgaaccat ttggagtagc acccaccaag gcaaagagaa gggtggtgca
781 aagagaaaaa aga
//
last modified: Tue May 31 10:56 2022