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LOCUS AY156868 792 bp DNA linear VRL 22-OCT-2002
DEFINITION HIV-1 clone V11 from USA truncated envelope glycoprotein (env)
gene, partial cds
ACCESSION AY156868
VERSION AY156868.1 GI:24210205
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 792)
Show all sequences for reference 1
AUTHORS Metzker,M.L., Ansari-Lari,M.A., Liu,X.M., Holder,D.J. and
Gibbs,R.A.
TITLE Quantitation of mixed-base populations of HIV-1 variants by
automated DNA sequencing with BODIPY dye-labeled primers
JOURNAL BioTechniques 25 (3), 446-447 (1998)
PUBMED 9762443
REFERENCE 2 (bases 1 to 792)
Show all sequences for reference 2
AUTHORS Metzker,M.L., Mindell,D.P., Liu,X.M., Ptak,R.G., Gibbs,R.A. and
Hillis,D.M.
TITLE Molecular evidence of HIV-1 transmission in a criminal case.
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14292-7 (2002)
PUBMED 12388776
REFERENCE 3 (bases 1 to 792)
Show all sequences for reference 3
AUTHORS Metzker,M.L., Liu,X.-M. and Gibbs,R.A.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2002) Department of Molecular & Human Genetics,
Baylor College of Medicine, One Baylor Plaza, N1409, Houston, TX
77030, USA
COMMENT There are 174 sequences in this group. A control group comprised of
28 individuals includes 26 env and 25 RT sequences taken in 1995.
Patient samples (66) include 51 env and 7 RT from 1995
(BCM,P01-50), 2 env and 6 RT from 1997 (MIC). Victim samples (57)
include 51 env and 2RT from 1995 (BCM,V01-50), and 2 env and 2 RT
from 1997 (MIC). This was a criminal case where a physician
intentionally infected the "victim" by intramuscular injection of
blood from the "patient". Victim was injected August, 1994 and
was seropositive in January, 1995.
FEATURES Location/Qualifiers
source 1..792
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="whole blood PBMC"
/db_xref="taxon:11676"
/clone="V11"
/country="USA: Lafayette, LA"
gene <1..103
/gene="env"
CDS <1..103
/gene="env"
/note="contains 1 base-pair deletion in C2 region"
/codon_start="2"
/transl_table="1"
/product="truncated envelope glycoprotein"
/protein_id="AAN41595.1"
/db_xref="GI:24210206"
/translation="IRPTVSTQLLLNGSLAEGEVVIRSENFTNNAKP"
BASE COUNT 340 a 126 c 159 g 167 t
ORIGIN
1 aattaggcca acagtatcaa ctcaattact gttaaatggc agtctagcag aaggagaggt
61 agtaattaga tctgaaaatt tcacgaacaa tgctaaacca taatagtaca gctgaaaaca
121 cctgtagaaa ttaattgtac aagacccaac aacaatacaa gaaaaagtat acctatagga
181 ccagggagag cactttatac aacaggagac ataataggag atataagaaa agcatattgt
241 aacattagta aagcaaaatg gaatgacact ctaagccaga tagttaaaaa attaggacaa
301 caatttaata aaacaacaat agtctttaag caatcctcag gaggggaccc agagattgca
361 atgcacagtt ttaactgtgg aggggaattt ttctactgta atacaacaca actgtttaat
421 agtacctgga atattactga aggaacaaat attactgaag aaacaaataa catggaagga
481 aataatacaa caatcatact cccatgcaga ataaaacaaa tgataaacat gtggcaggag
541 gcaggaaaag caatgtatgc cccgcccatc caaggaataa ttagctgctc atcaaatatt
601 acagggctac tactaacaag agatggcggt aatagtaatg acaccagaga taatgagacc
661 ttcagacctg gaggaggaga tatgaaggac aattggagaa gtgaattata taaatataaa
721 gtagtaaaaa ttgaaccatt aggagtagca cccaccaagg caaagagaag ggtggtgcaa
781 agagaaaaaa ga
//
last modified: Tue May 31 10:56 2022