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LOCUS	    AY156868		     792 bp    DNA     linear	VRL 22-OCT-2002
DEFINITION  HIV-1 clone V11 from USA truncated envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   AY156868
VERSION     AY156868.1 GI:24210205
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 792)
            Show all sequences for reference 1
  AUTHORS   Metzker,M.L., Ansari-Lari,M.A., Liu,X.M., Holder,D.J. and
	    Gibbs,R.A.
  TITLE     Quantitation of mixed-base populations of HIV-1 variants by
	    automated DNA sequencing with BODIPY dye-labeled primers
  JOURNAL   BioTechniques 25 (3), 446-447 (1998)
  PUBMED    9762443
REFERENCE   2 (bases 1 to 792)
            Show all sequences for reference 2
  AUTHORS   Metzker,M.L., Mindell,D.P., Liu,X.M., Ptak,R.G., Gibbs,R.A. and
	    Hillis,D.M.
  TITLE     Molecular evidence of HIV-1 transmission in a criminal case.
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14292-7 (2002)
  PUBMED    12388776
REFERENCE   3 (bases 1 to 792)
            Show all sequences for reference 3
  AUTHORS   Metzker,M.L., Liu,X.-M. and Gibbs,R.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2002) Department of Molecular & Human Genetics,
	    Baylor College of Medicine, One Baylor Plaza, N1409, Houston, TX
	    77030, USA
COMMENT     There are 174 sequences in this group. A control group comprised of
	    28 individuals includes 26 env and 25 RT sequences taken in 1995.
	    Patient samples (66) include 51 env and 7 RT from 1995
	    (BCM,P01-50), 2 env and 6 RT from 1997 (MIC). Victim samples (57)
	    include 51 env and 2RT from 1995 (BCM,V01-50), and 2 env and 2 RT
	    from 1997 (MIC). This was a criminal case where a physician
	    intentionally infected the "victim" by intramuscular injection of
	    blood from the "patient". Victim was injected August, 1994 and
	    was seropositive in January, 1995.
FEATURES             Location/Qualifiers
     source	     1..792
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="whole blood PBMC"
		     /db_xref="taxon:11676"
		     /clone="V11"
		     /country="USA: Lafayette, LA"
     gene	     <1..103
		     /gene="env"
     CDS	     <1..103
		     /gene="env"
		     /note="contains 1 base-pair deletion in C2 region"
		     /codon_start="2"
		     /transl_table="1"
		     /product="truncated envelope glycoprotein"
		     /protein_id="AAN41595.1"
		     /db_xref="GI:24210206"
		     /translation="IRPTVSTQLLLNGSLAEGEVVIRSENFTNNAKP"
BASE COUNT	340 a	 126 c	  159 g    167 t
ORIGIN
       1 aattaggcca acagtatcaa ctcaattact gttaaatggc agtctagcag aaggagaggt 
      61 agtaattaga tctgaaaatt tcacgaacaa tgctaaacca taatagtaca gctgaaaaca 
     121 cctgtagaaa ttaattgtac aagacccaac aacaatacaa gaaaaagtat acctatagga 
     181 ccagggagag cactttatac aacaggagac ataataggag atataagaaa agcatattgt 
     241 aacattagta aagcaaaatg gaatgacact ctaagccaga tagttaaaaa attaggacaa 
     301 caatttaata aaacaacaat agtctttaag caatcctcag gaggggaccc agagattgca 
     361 atgcacagtt ttaactgtgg aggggaattt ttctactgta atacaacaca actgtttaat 
     421 agtacctgga atattactga aggaacaaat attactgaag aaacaaataa catggaagga 
     481 aataatacaa caatcatact cccatgcaga ataaaacaaa tgataaacat gtggcaggag 
     541 gcaggaaaag caatgtatgc cccgcccatc caaggaataa ttagctgctc atcaaatatt 
     601 acagggctac tactaacaag agatggcggt aatagtaatg acaccagaga taatgagacc 
     661 ttcagacctg gaggaggaga tatgaaggac aattggagaa gtgaattata taaatataaa 
     721 gtagtaaaaa ttgaaccatt aggagtagca cccaccaagg caaagagaag ggtggtgcaa 
     781 agagaaaaaa ga
//
last modified: Tue May 31 10:56 2022


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