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LOCUS AY156737 689 bp DNA linear VRL 22-OCT-2002
DEFINITION HIV-1 clone P4.BCM.RT from USA reverse transcriptase (pol) gene,
partial cds
ACCESSION AY156737
VERSION AY156737.1 GI:24209945
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 689)
Show all sequences for reference 1
AUTHORS Metzker,M.L., Mindell,D.P., Liu,X.M., Ptak,R.G., Gibbs,R.A. and
Hillis,D.M.
TITLE Molecular evidence of HIV-1 transmission in a criminal case.
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14292-7 (2002)
PUBMED 12388776
REFERENCE 2 (bases 1 to 689)
Show all sequences for reference 2
AUTHORS Metzker,M.L., Liu,X.-M. and Gibbs,R.A.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2002) Department of Molecular & Human Genetics,
Baylor College of Medicine, One Baylor Plaza, N1409, Houston, TX
77030, USA
COMMENT There are 174 sequences in this group. A control group comprised of
28 individuals includes 26 env and 25 RT sequences taken in 1995.
Patient samples (66) include 51 env and 7 RT from 1995
(BCM,P01-50), 2 env and 6 RT from 1997 (MIC). Victim samples (57)
include 51 env and 2RT from 1995 (BCM,V01-50), and 2 env and 2 RT
from 1997 (MIC). This was a criminal case where a physician
intentionally infected the "victim" by intramuscular injection of
blood from the "patient". Victim was injected August, 1994 and
was seropositive in January, 1995.
FEATURES Location/Qualifiers
source 1..689
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="whole blood PBMC"
/db_xref="taxon:11676"
/clone="P4.BCM.RT"
/country="USA: Lafayette, LA"
gene <1..>689
/gene="pol"
CDS <1..>689
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAN41465.1"
/db_xref="GI:24209946"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGLTTPD
KKHQKEPPFLW"
BASE COUNT 282 a 114 c 135 g 158 t
ORIGIN
1 cccataagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaaa
61 gttaaacaat ggccactgac agaagaaaaa ataaaagcat tagtagaaat ttgtacagaa
121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt cagagaactt
241 aataagagaa ctcaggactt ctgggaagtt caattaggaa taccacatcc tgcagggtta
301 aaaaagaaaa aatcagtaac agtgctggat gtgggtgatg catatttttc agttccctta
361 gataaagagt tcaggaagta tactgcattt accataccta gtataaacaa tgagacacca
421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 caaagtagca tgacaaaaat cttagagcct tttagaaaac aaaatccaga catagttatc
541 tatcaataca tggatgatct gtatgtagga tctgacttag aaatagggca gcatagaata
601 aaaatagagg aactaagaca acatctgttg aagtggggac ttaccacacc agacaaaaaa
661 catcagaagg aacccccatt cctttggat
//
last modified: Tue May 31 10:56 2022