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LOCUS AY037284S1 5191 bp DNA linear VRL 7-OCT-2001
DEFINITION HIV-1 from Cameroon pol protein (pol) gene, partial cds; vif
protein (vif) and vpr protein (vpr) genes, complete cds; and tat
protein (tat) and rev protein (rev) genes, partial cds
ACCESSION AY037284
VERSION AY037284.1 GI:15982642
KEYWORDS .
SEGMENT 1 of 2
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 5191)
Show all sequences for reference 1
AUTHORS Carr,J.K., Torimiro,J., Wolfe,N., Eitel,M., Kim,B.,
Sanders-Buell,E., Jagodzinski,L., Gotte,D., Burke,D., Birx,D. and
McCutchan,F.
TITLE Direct Submission
JOURNAL Submitted (31-MAY-2001) Global Molecular Epidemiology, Henry M.
Jackson Foundation, 1 Taft Court, Rockville, MD 20850, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Carr,J.K., Torimiro,J.N., Torimiro,J., Wolfe,N., Wolfe,N.D.,
Eitel,M., Eitel,M.N., Kim,B., Sanders-Buell,E., Jagodzinski,L.,
Jagodzinski,L.L., Gotte,D., Burke,D., Burke,D.S., Birx,D.L.,
Birx,D., McCutchan,F. and McCutchan,F.E.
TITLE The AG recombinant IbNG and novel strains of group M HIV-1 are
common in Cameroon
JOURNAL Virology 286 (1), 168-181 (2001)
PUBMED 11448170
COMMENT This virus was PCR-amplified from PBMC DNA from a 46-year-old man
living in Bertoua, Cameroon, who had acquired his infection by a
blood transfusion. It appears to be a novel recombinant of CRF01_AE
and subtype A. The patient's viral load was 591,000 at the time of
sampling. This is segment 1 of a 2 segment entry, with the env
through nef gene region in the entry with accession number
AY037285. The region of bases 3350-3850 is more similar to many
nonrecombinant subtype A strains than it is to CRF01_AE strains.
Another region in env, where CRF01_AE strains are "E", is also
A-like in the other fragment of this genome AY03785. This virus is
thus beleived to represent a "backcross" between a CRF01_AE
genome and a subtype A genome.
FEATURES Location/Qualifiers
source 1..5191
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/db_xref="taxon:11676"
/country="Cameroon: Bertoua"
/note="isolated from PBMC DNA from a 46-year-old man who
had acquired his infection by a blood transfusion subtype:
novel recombinant of CRF01_AE and subtype A"
misc_feature 1..1500
/note="nonfunctional gag protein due to mutation"
gene <1293..4304
/gene="pol"
CDS <1293..4304
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL09935.1"
/db_xref="GI:15982647"
/translation="FFRENLAFQQGKARKFSSEQTRANSPTSRELWDGGRDNLLPEAG
AERQGTASSFNLPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLENIDLPGKWKPKM
IGGIGGFIKVRQYDQIPIEICGKKAIGTVLIGPTPVNIIGRNMLTQIGCTLNFPISPI
ETVPVVLKPGMDGPKVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLY
EGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRTKNPEIV
IYQYMDDLYVGSDLEIEQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPIKLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDVVPL
TEEAELELAENREILKDPVHGVYYDPLKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGK
YARRRSAHTNDVKQLTEVVQKVATESIVIWGKTPKFKLPIQKETWEAWWMEYWQATWI
PEWEFVNTPPLVKLWYQLEKDPIIGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSL
TETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIE
KEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHERYHSNWRAIVSD
FNLPPIIAKEIVASCNKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGY
IEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSNFTSAAVKAACWWADIQQEFGI
PYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGER
IIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDI
KVVPRRKAKIIRDYGKQMAGDDCVAGRQDEN"
gene 4249..4827
/gene="vif"
CDS 4249..4827
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="AAL09938.1"
/db_xref="GI:15982650"
/translation="MENRWQVMIVWQVDRMRIRTWNSLVKHHIYVSKKARKWCYRHHY
DCRNPRASSEVHIPLGDARLVVRTYWGLHTGEKDWQLGHGVSIEWRQEKYSTQVDPDM
ADQLIHMHYFDCFSDSAIRKAILGQVVRPSCEYPTGHNKVGTLQYLALKTLVATKKIT
PPLPSVRKLTEDRWNKPQKTRGRRENPTMNGH"
gene 4767..5057
/gene="vpr"
CDS 4767..5057
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="AAL09936.1"
/db_xref="GI:15982648"
/translation="MEQAPEDQGPQREPYNEWTLELLEELKIEAVRHFPRPWLHGLGQ
HIYETYGDTWEGVEAIIRILQQLLFVHFRIGCQHSRIGIIRGRRGRNGAGRS"
gene 5038..>5191
/gene="tat"
CDS 5038..>5191
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="AAL09939.1"
/db_xref="GI:15982651"
/translation="MEPVDPNLDPWNHPGSQPTTACNNCFCKKCCWHCQVCFLKKGLG
ISYGRKK"
gene 5177..>5191
/gene="rev"
CDS 5177..>5191
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AAL09940.1"
/db_xref="GI:15982652"
/translation="MAGRS"
BASE COUNT 2011 a 867 c 1189 g 1124 t
ORIGIN
1 ataggtgcga gagcgtcagt attaagtgga ggaaaattag atgcatgaga gaaaattcgg
61 ttaaggccag ggagaaagaa aaaatataga atgaaacata tagtataggc aagcagagag
121 ctagaaagat tcgcacttaa ccctggcctt ttagaaacag cagaaggatg tcaacaaata
181 atagaacaat tacaatcaac tctcaagaca ggatcagaag aacttagatc attatataat
241 acaatagtaa ccctcttttg tgtacatcaa cggatagatg taaaagacac caaggaagct
301 ctagataaaa tagaggagat acaaaataag agcaagcaaa agacacagca ggaagcagct
361 ggcacaggaa gcagcagcaa ggtcagccaa aattacccta taatgcaaaa tgcacaaggg
421 caaatggtac atcaggcttt atcacctaga actttgaatg cataggtaaa agtagtagaa
481 gaaaagggct ttaacccaga agtaataccc gtgttctcag cattatcaga gggagctacc
541 ccacaagatt taaatatgat gctaaacata gtagagggac atcaggcagc aatgcaaatg
601 ttaaaagata ctatcaatga ggaagctgca gaataggata aggtacaccc agtacaggca
661 gggccttatc taccaggcca gatgagagaa ccaaagggga gtgacatagc aagaactact
721 agtacccttc aagaacaaat aggatggatg acaagcaacc cacctatccc agtaggagaa
781 atctataaaa ggtggataat actaggatta aataaaatag taagaatgta tagccctgtt
841 agcattttgg acataagaca aaggccaaaa gaacctttca gagactatat agatagattc
901 tttaaaactc tcagagcgga acaagctaca caggaggtaa aaaactagat gacagaaacc
961 ttactagtcc aaaatgcgaa cccagactgt aagtccattt taaaagcatt aggaacaggg
1021 gctacattag aagaaatgat gacagcatgc cagagagtaa gaggacctag tcataaagca
1081 aaggttttag ctgaggcaat gagtcaagta caacatgcag gtataatgat gcagagaggc
1141 aattttaaag gccagagaag aattaagtgt ttcgactgtg gcaaagaagg acacctagcc
1201 agaaattgca gggcccctag aagaaagggt tgttggaaat gtgggaagga aggacaccaa
1261 atgaaagact gcactgcaga gaaacaggtt aattttttag ggaaaatttg gccttccagc
1321 aagggaaggc caggaaattt tcctcagagc agaccagagc caacagcccc accagcagag
1381 agctttggga tgggggaaga gataacctcc tccccgaagc aggagcagag agacagggaa
1441 cagcttcctc ctttaatctc cctcaaatca ctctttggca acgacccctt gttacagtaa
1501 aaataggagg acagctaaaa gaagctctac tagatacagg agcagatgat acagtgttag
1561 aaaacataga tttgccagga aaatggaaac caaaaatgat agggggaatt ggagggttta
1621 taaaggtaag gcaatatgat caaataccta tagaaatttg tggaaaaaag gctataggta
1681 cagtattaat aggacctaca cctgtcaaca taattggacg aaatatgttg acccagattg
1741 gctgtacttt aaatttccca ataagtccta ttgaaactgt gccagtagta ttaaaaccag
1801 gaatggatgg accaaaggtt aagcaatggc cattgacaga agaaaaaata aaagcattaa
1861 cagaaatttg taaagaaatg gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc
1921 catacaatac tccaatattt gctataaaga aaaaagacag cactaaatgg agaaaattag
1981 tagatttcag agaacttaat aaaagaactc aggatttctg ggaagttcaa ttaggaatac
2041 cgcatccagc gggtttaaaa aagaaaaaat cagtaacagt actggatgtg ggggatgcat
2101 acttttcagt tcctttgtat gaaggcttta gaaagtatac tgcattcact atacctagta
2161 taaacaatga gacaccagga atcagatatc agtacaatgt gcttccacaa ggatggaaag
2221 gatcaccggc aatattccag agtagcatga caaaaatctt agatcccttt agaacaaaga
2281 atccagaaat agttatctat caatacatgg atgacttgta tgtaggatct gatttagaaa
2341 tagagcagca tagaacaaaa atagaggagt tgagagctca tctattgagt tgggggttta
2401 ctacaccaga caaaaagcat caaaaagaac ctccatttct ctggatggga tatgaactcc
2461 atcctgacaa atggacagtc cagcctataa agctgccaga caaagatagc tggactgtca
2521 atgatataca gaaactagtg ggaaaactaa attgggcaag tcagatttat gcagggatta
2581 aagtaaagca gctgtgtaaa ctactcaggg gagccaaagc actaacagat gtagtaccat
2641 tgaccgagga agcagaatta gaattggcag agaataggga gattctaaaa gaccctgtgc
2701 atggagtcta ttatgaccca ttaaaagatt taatagcaga aatacagaaa caaggacaag
2761 accaatggac atatcaaatt tatcaagagc catttaaaaa tctaaaaaca ggaaaatatg
2821 caagaaggag gtctgctcat actaatgatg taaaacaatt aacagaagtg gtgcaaaagg
2881 tggccacaga aagcatagta atatggggaa agactcctaa atttaaacta cccatacaaa
2941 aagaaacatg ggaagcatgg tggatggagt attggcaggc tacctggatt cctgaatggg
3001 agtttgtcaa tacccctcct ctagtaaaat tatggtacca attagaaaaa gaccctataa
3061 taggagcaga gactttctat gtagatgggg catctaatag ggagactaag ctaggaaaag
3121 cagggtatgt cactgacaga ggaagacaaa aggtagtttc cctaactgag acaacaaatc
3181 aaaagactga actacatgcg atccatttag ccttgcagga ttcaggatca gaagtaaata
3241 tagtaacaga ctcacagtat gcattaggaa ttattcaggc acaaccagat agaagtgaat
3301 cagagatagt caatcaaata atagagaaac taatagaaaa ggaaaaagtc tacctgtcat
3361 gggtaccagc gcacaaggga attggaggaa atgaacaggt agataaatta gttagttcag
3421 gaatcaggaa ggtattattt ctagatggaa tagataaggc tcaagaagac catgaaaggt
3481 atcacagcaa ttggagagca atagttagtg attttaatct gccacctata atagcaaagg
3541 aaatagtggc cagctgtaat aaatgtcaac taaaagggga agccatacat ggacaagtag
3601 actgcagtcc agggatatgg caattagatt gcacacatct agaaggaaaa gtgatcttgg
3661 tagcagtcca tgtagccagt ggctatatag aagcagaagt tatcccagca gaaacgggac
3721 aggagacagc atattttcta ctaaaattag caggaagatg gccagtaaaa gtaatacaca
3781 cagacaatgg aagcaacttc accagcgctg cagttaaagc agcctgttgg tgggcagata
3841 tccaacagga atttggaatt ccctacaatc cccaaagtca aggagtagtg gaatctatga
3901 ataaagagtt aaagaaaatc atagggcaag taagagaaca agctgaacac cttaagacag
3961 cagtacaaat ggcagtattc attcacaatt ttaaaagaaa aggggggatt ggggggtaca
4021 gtgcagggga aagaataata gacataatag caacagacat acaaacgaaa gaattacaaa
4081 aacaaattac aaaaattcaa aattttcggg tttattacag ggacagcaga gacccaattt
4141 ggaaaggacc agcaaaacta ctctggaaag gtgaaggggc cgtagtaata caagacaata
4201 gtgatataaa agtagtacca agaagaaaag caaagatcat tagggattat ggaaaacaga
4261 tggcaggtga tgattgtgtg gcaggtagac aggatgagaa ttagaacatg gaacagtcta
4321 gtaaaacatc atatatatgt ctcaaagaaa gctagaaaat ggtgttatag acatcactat
4381 gactgcagga atccaagagc aagttcagaa gtacacatcc cactagggga tgctagatta
4441 gtagtaagaa catattgggg tctgcataca ggagaaaagg actggcaatt gggtcatggg
4501 gtctccatag aatggaggca ggaaaaatat agtacacaag tagatcctga catggcagac
4561 caactaattc atatgcatta ctttgactgt ttttcagact ctgccataag gaaagccata
4621 ttaggacaag tagttagacc tagttgtgaa tacccaacag gacataacaa ggtaggaacc
4681 ctacaatatt tggcattgaa aacattagta gcaacaaaaa agataacacc acctctgcct
4741 agtgttagga aattaacaga agatagatgg aacaagcccc agaagaccag gggccgcaga
4801 gagaacccta caatgaatgg acattagaat tattagaaga gcttaaaatt gaagctgtta
4861 gacattttcc taggccctgg ctccatggcc taggacagca tatctatgaa acttatgggg
4921 atacttggga aggggttgaa gctataataa gaattttgca acaactactg tttgttcatt
4981 tcagaattgg gtgtcaacat agcagaatag gcattatacg agggagaaga ggcaggaatg
5041 gagccggtag atcctaacct agatccctgg aatcatccgg gaagtcagcc tacaactgct
5101 tgtaacaatt gtttttgtaa aaagtgttgc tggcattgcc aagtttgctt tctgaaaaaa
5161 ggcttaggca tctcctatgg caggaagaag c
//
last modified: Tue May 31 10:56 2022