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LOCUS	    AY032222		    1107 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC5975-2000 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY032222
VERSION     AY032222.1 GI:13739481
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1107)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1107)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Gonzales,M.J., Johnson,E., Dupnik,K.M., Imamichi,T. and Shafer,R.W.
  TITLE     Colinearity of reverse transcriptase inhibitor resistance mutations
	    detected by population-based sequencing
  JOURNAL   J. Acquir. Immune Defic. Syndr. 34 (4), 398-402 (2003)
  PUBMED    14615657
FEATURES             Location/Qualifiers
     source	     1..1107
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC5975-2000"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1107
		     /gene="pol"
     CDS	     <1..>1107
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK37037.1"
		     /db_xref="GI:13739482"
		     /translation="IVTIKIGGQLKEALLDTGADDTVLEEMTLPGKWKPKMIGGIGGF
		     VKVRQYEQVPVEICGHKAIGTVLVGPTPFNIIGRNLLTQLGCTLNFPISPIETVPVKL
		     KPGMDGPKVKQWPLTEEKIKALVEICTEXEKEGKISKIGPENPYNTPVFAIKKKNSTK
		     WRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVPLDKDFRKYT
		     AFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYVDD
		     LYVGSDLEIGQHRTKIEELRHHLXKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPI
		     VLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQL"
BASE COUNT	436 a	 175 c	  230 g    261 t      5 other
ORIGIN
       1 atcgtcacaa taaagatagg ggggcaacta aaggaagctc tattagatac aggagcagat 
      61 gatacagtat tagaagaaat gactttgcca ggaaaatgga aaccaaaaat gataggggga 
     121 attggaggat ttgtcaaagt aagacagtat gaacaggtac ccgtagaaat ctgtggacat 
     181 aaagctatag gtacagtatt agtaggacct acacctttca acataattgg aagaaatctg 
     241 ttgactcagc ttggttgcac tttaaatttt ccyattagtc ctattgaaac tgtaccagta 
     301 aaattaaaac caggaatgga tggcccaaaa gttaaacaat ggccattgac agaagagaaa 
     361 ataaaagcat tagtagaaat ttgtacagaa htggaaaagg aaggaaaaat ttcaaaaatt 
     421 gggcctgaaa atccatacaa tactccagta tttgccataa agaaaaagaa cagtactaaa 
     481 tggagaaaat tagtagattt cagagaactt aataagaaaa ctcaagactt ctgggaagtt 
     541 caattaggaa taccacaccc agcagggtta aaaaagaaca aatcagtaac agtactggat 
     601 gtgggcgatg catatttttc agttcctcta gataaagatt tcaggaagta tactgcattt 
     661 accataccta gtataaacaa tgagacacca gggattagat atcagtacaa tgtgcttcca 
     721 cagggatgga aaggatcacc agcaatattc caaagtagca tgacaaaaat cttagagcct 
     781 tttagaaaac aaaatccaga tatagtcatc tatcaatacg tggatgattt gtatgtagga 
     841 tctgacttag aaatagggca gcatagaaca aaaatagagg aactaagaca ccatctgtkg 
     901 aaatggggat tttacacacc agacaaaaaa catcagaaag aacctccatt cctttggatg 
     961 ggttatgaac tccatcctga taaatggaca gtacagccta tagtgctgcc agaraargac 
    1021 agctggactg tcaatgacat acagaagtta gtgggaaaat tgaattgggc aagtcagatt 
    1081 tacccaggga ttaaagtaaa gcaatta
//
last modified: Tue May 31 10:56 2022


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