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LOCUS	    AY030604		     971 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1469-1998 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030604
VERSION     AY030604.1 GI:13736245
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 971)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 971)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
	    Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
	    Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
  TITLE     Predictive value of HIV-1 genotypic resistance test interpretation
	    algorithms.
  JOURNAL   J. Infect. Dis.. 200(3); 453-63 (2009)
  PUBMED    19552527
FEATURES             Location/Qualifiers
     source	     1..971
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1469-1998"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>971
		     /gene="pol"
     CDS	     <1..>971
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35419.1"
		     /db_xref="GI:13736246"
		     /translation="PQITLWQRPIVTIKIXGQLKEALLDTGADDTVLEEMDLPGRWKP
		     KVIVGIGGFSKVRQYDQIPIEICGHKIIGTVLIGPTPANIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVF
		     AIKKKNSTRWRKIVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
		     LDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQXRTKVEELRQYLLKWGFFTPEQKHQKEP"
BASE COUNT	382 a	 159 c	  198 g    223 t      9 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccatc gtcacaataa agatagsagg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgga tttgccagga 
     121 agatggaaac caaaagtgat agtgggaatt ggaggtttta gcaaagtgag acagtatgat 
     181 cagataccca tagaaatctg tggacataag attataggta cagtattaat aggacctaca 
     241 cctgcyaaca taattggaag aaatctgttg actcaacttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaactg 
     421 gaaaargaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaagaatag tactagatgg agaaaaatag tagayttcag rgaacttaay 
     541 aaragaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcaat tcccttagat 
     661 gaggacttca ggaagtatac tgcatttacc atacctagca craacaatga gacaccaggg 
     721 attaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcccttt agaaaacaaa atccagacat agttatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcagca kagaacaaaa 
     901 gtagaggaac tgagacaata tctactcaag tgggggtttt tcacaccaga acaaaaacat 
     961 cagaaagaac c
//
last modified: Tue May 31 10:56 2022


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