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LOCUS AY030573 1047 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC1435-1998 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030573
VERSION AY030573.1 GI:13736183
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1047)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 1047)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
TITLE Predictive value of HIV-1 genotypic resistance test interpretation
algorithms.
JOURNAL J. Infect. Dis.. 200(3); 453-63 (2009)
PUBMED 19552527
FEATURES Location/Qualifiers
source 1..1047
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC1435-1998"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>1047
/gene="pol"
CDS <1..>1047
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35388.1"
/db_xref="GI:13736184"
/translation="PQITLWQRPVVSIKIGGQQKEAILDTGADDTILEELSLPGRWKP
KIIGGIGGLIKVRQYDQVPIEICGHKVIGTVLVGPTPANIIGRNLMTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALKEICTELEKEGKISKIGPENPYNTPIF
AIKKKNSDRWRKVVDFRELNKRTQDFWEVQLGIPHPAGLKKKNSVTVLDVGDAYFSIP
LDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQDSMTKILEPFRKQNPD
IVICQYMDDLYVXSDLEIGQHRTKIEELRQHLLRWGLFTPDQKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKD"
BASE COUNT 410 a 170 c 217 g 249 t 1 other
ORIGIN
1 cctcagatca ctctttggca acgacccgtc gtctcaataa agataggagg gcaacaaaag
61 gaagctatat tagatacagg agcagatgat acaatattag aagaactgag tttgccagga
121 agatggaaac caaaaataat agggggaatt ggaggtctta tcaaagtaag acaatatgat
181 caggtaccca tagaaatctg tggacataaa gttataggta cagtattagt aggacctaca
241 cctgccaaca taattggaag aaatctgatg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa aagaaatttg tacagaattg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gctataaaga agaaaaacag tgatagatgg agaaaagtag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaatt cagtaacagt actggatgtg ggtgatgcat atttttcaat tcccttagat
661 gaagatttta ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 gatagcatga caaaaatctt agagccgttt agaaaacaaa atccagacat agttatctgt
841 caatacatgg atgatttgta tgtaagmtct gatttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tcttttgagg tggggattat tcactccaga ccaaaaacat
961 cagaaagaac ccccattcct ttggatgggg tatgaactcc atcctgataa atggacagta
1021 cagccaatag tgctgccaga aaaggac
//
last modified: Tue May 31 10:56 2022