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LOCUS	    AY030573		    1047 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1435-1998 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030573
VERSION     AY030573.1 GI:13736183
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1047)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1047)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
	    Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
	    Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
  TITLE     Predictive value of HIV-1 genotypic resistance test interpretation
	    algorithms.
  JOURNAL   J. Infect. Dis.. 200(3); 453-63 (2009)
  PUBMED    19552527
FEATURES             Location/Qualifiers
     source	     1..1047
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1435-1998"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1047
		     /gene="pol"
     CDS	     <1..>1047
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35388.1"
		     /db_xref="GI:13736184"
		     /translation="PQITLWQRPVVSIKIGGQQKEAILDTGADDTILEELSLPGRWKP
		     KIIGGIGGLIKVRQYDQVPIEICGHKVIGTVLVGPTPANIIGRNLMTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALKEICTELEKEGKISKIGPENPYNTPIF
		     AIKKKNSDRWRKVVDFRELNKRTQDFWEVQLGIPHPAGLKKKNSVTVLDVGDAYFSIP
		     LDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQDSMTKILEPFRKQNPD
		     IVICQYMDDLYVXSDLEIGQHRTKIEELRQHLLRWGLFTPDQKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKD"
BASE COUNT	410 a	 170 c	  217 g    249 t      1 other
ORIGIN
       1 cctcagatca ctctttggca acgacccgtc gtctcaataa agataggagg gcaacaaaag 
      61 gaagctatat tagatacagg agcagatgat acaatattag aagaactgag tttgccagga 
     121 agatggaaac caaaaataat agggggaatt ggaggtctta tcaaagtaag acaatatgat 
     181 caggtaccca tagaaatctg tggacataaa gttataggta cagtattagt aggacctaca 
     241 cctgccaaca taattggaag aaatctgatg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa aagaaatttg tacagaattg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gctataaaga agaaaaacag tgatagatgg agaaaagtag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaatt cagtaacagt actggatgtg ggtgatgcat atttttcaat tcccttagat 
     661 gaagatttta ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 gatagcatga caaaaatctt agagccgttt agaaaacaaa atccagacat agttatctgt 
     841 caatacatgg atgatttgta tgtaagmtct gatttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tcttttgagg tggggattat tcactccaga ccaaaaacat 
     961 cagaaagaac ccccattcct ttggatgggg tatgaactcc atcctgataa atggacagta 
    1021 cagccaatag tgctgccaga aaaggac
//
last modified: Tue May 31 10:56 2022


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