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LOCUS AY030534 1119 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC1339-1998 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030534
VERSION AY030534.1 GI:13736105
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1119)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 1119)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
TITLE Predictive value of HIV-1 genotypic resistance test interpretation
algorithms.
JOURNAL J. Infect. Dis.. 200(3); 453-63 (2009)
PUBMED 19552527
FEATURES Location/Qualifiers
source 1..1119
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC1339-1998"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>1119
/gene="pol"
CDS <1..>1119
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35349.1"
/db_xref="GI:13736106"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADNTVLEDINLPGRWQP
KMIGGIGGFIKVRQYDQVSVDICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICSEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKVVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPD
IVICQYVDDLYVASDLEIGQHRXKIEELRQHLLQWGFTTPDKKHQKEPPFLWMGYELH
PBKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGI"
BASE COUNT 422 a 186 c 238 g 269 t 4 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gttacaataa agataggggg gcaactgaag
61 gaagctctac tagatacagg agcagataat acagtattag aagacataaa tttgccagga
121 agatggcaac caaaaatgat agggggaatt ggaggtttta tcaaagtgag acagtatgat
181 caggtatccg tagatatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcaaattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg ttcagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaagtag tagatttcag agaacttaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacatccagc agggttggaa
601 aagaaaaagt cagtaacagt attggatgtg ggtgatgcat atttttcagt tcctttagat
661 aaggacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcacccgc aatattccaa
781 gctagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctgt
841 cartacgtgg atgatttgta tgtagcgtct gacttagaaa tagggcagca tagarcaaaa
901 atagargaac tgagacaaca tctgttgcag tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctrataa atggacagta
1021 cagcctatag agctgccaga aaaggacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac ccagggatt
//
last modified: Tue May 31 10:56 2022