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LOCUS	    AY030534		    1119 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1339-1998 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030534
VERSION     AY030534.1 GI:13736105
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1119)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1119)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
	    Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
	    Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
  TITLE     Predictive value of HIV-1 genotypic resistance test interpretation
	    algorithms.
  JOURNAL   J. Infect. Dis.. 200(3); 453-63 (2009)
  PUBMED    19552527
FEATURES             Location/Qualifiers
     source	     1..1119
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1339-1998"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1119
		     /gene="pol"
     CDS	     <1..>1119
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35349.1"
		     /db_xref="GI:13736106"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADNTVLEDINLPGRWQP
		     KMIGGIGGFIKVRQYDQVSVDICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICSEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKVVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPD
		     IVICQYVDDLYVASDLEIGQHRXKIEELRQHLLQWGFTTPDKKHQKEPPFLWMGYELH
		     PBKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGI"
BASE COUNT	422 a	 186 c	  238 g    269 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gttacaataa agataggggg gcaactgaag 
      61 gaagctctac tagatacagg agcagataat acagtattag aagacataaa tttgccagga 
     121 agatggcaac caaaaatgat agggggaatt ggaggtttta tcaaagtgag acagtatgat 
     181 caggtatccg tagatatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcaaattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg ttcagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaagtag tagatttcag agaacttaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacatccagc agggttggaa 
     601 aagaaaaagt cagtaacagt attggatgtg ggtgatgcat atttttcagt tcctttagat 
     661 aaggacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcacccgc aatattccaa 
     781 gctagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctgt 
     841 cartacgtgg atgatttgta tgtagcgtct gacttagaaa tagggcagca tagarcaaaa 
     901 atagargaac tgagacaaca tctgttgcag tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctrataa atggacagta 
    1021 cagcctatag agctgccaga aaaggacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac ccagggatt
//
last modified: Tue May 31 10:56 2022


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