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LOCUS AY030478 1200 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC1172-1997 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030478
VERSION AY030478.1 GI:13735993
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1200)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 1200)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
FEATURES Location/Qualifiers
source 1..1200
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC1172-1997"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>1200
/gene="pol"
CDS <1..>1200
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35293.1"
/db_xref="GI:13735994"
/translation="PQITLWQRPLVTIKVGGQLREALLDTGADNTVLEDXDXPGXWKP
XXIGGIGGFIXVRQYXQVXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTELEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYVDDLYVGSDLEIGQHRTKIEELRQHLLRWGFYTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
PLTEEAEL"
BASE COUNT 461 a 198 c 252 g 273 t 16 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactgagg
61 gaagctctat tagatacagg agcagataat acagtattag aagayayaga tttsccmgga
121 agmtggaaac camaamtgat agggggaatt ggaggtttta tcmaagtaag acagtatgaw
181 cargtastca tagaaatttg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcarattg gttgcacttt aaaytttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagaactg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagtccaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagac
661 aaagacttca ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca cagaacaaaa
901 atagaggaac tgagacarca tctgytgagg tggggatttt acacaccaga caaaaaacat
961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagy tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac gcagggatta aagtaaagca attatgtaaa
1141 ctccttaggg gaaccaaagc actaacagaa gtaataccac taacagaaga agcagagcta
//
last modified: Tue May 31 10:56 2022