HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AY030478		    1200 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1172-1997 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030478
VERSION     AY030478.1 GI:13735993
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1200)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1200)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
FEATURES             Location/Qualifiers
     source	     1..1200
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1172-1997"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1200
		     /gene="pol"
     CDS	     <1..>1200
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35293.1"
		     /db_xref="GI:13735994"
		     /translation="PQITLWQRPLVTIKVGGQLREALLDTGADNTVLEDXDXPGXWKP
		     XXIGGIGGFIXVRQYXQVXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTELEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYVDDLYVGSDLEIGQHRTKIEELRQHLLRWGFYTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
		     PLTEEAEL"
BASE COUNT	461 a	 198 c	  252 g    273 t     16 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactgagg 
      61 gaagctctat tagatacagg agcagataat acagtattag aagayayaga tttsccmgga 
     121 agmtggaaac camaamtgat agggggaatt ggaggtttta tcmaagtaag acagtatgaw 
     181 cargtastca tagaaatttg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcarattg gttgcacttt aaaytttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagaactg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagtccaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagac 
     661 aaagacttca ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca cagaacaaaa 
     901 atagaggaac tgagacarca tctgytgagg tggggatttt acacaccaga caaaaaacat 
     961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagy tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac gcagggatta aagtaaagca attatgtaaa 
    1141 ctccttaggg gaaccaaagc actaacagaa gtaataccac taacagaaga agcagagcta 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.