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LOCUS AY030438 1065 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC1121-1997 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030438
VERSION AY030438.1 GI:13735913
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1065)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 1065)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
FEATURES Location/Qualifiers
source 1..1065
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC1121-1997"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>1065
/gene="pol"
CDS <1..>1065
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35253.1"
/db_xref="GI:13735914"
/translation="PQITLWQRPLVTIRVGGQLTEALLDTGADDTVLEDIDLPGRWKP
KMIGGIGGFVKVRQYDQVPIEICGHKVISTVLVGPTPVNIIGRNLMTQIGCTLNFPIS
PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVF
AIKKKNSDKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDXDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYVDDLYVGSDLELGQHRTKIEELRQHLLKWGFYTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVND"
BASE COUNT 402 a 176 c 229 g 256 t 2 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctc gtcacaataa gggtaggggg gcaactaacg
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataga tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggttttg tcaaagtaag acagtatgat
181 caggtaccca tagaaatatg tggacataaa gttataagta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgatg actcagattg gttgtacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagggtt
361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaattg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaagaacag tgataaatgg agaaaattag tagattttag agaacttaat
541 aagagaactc aagatttctg ggaagttcaa ttaggaatac cgcatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 raagacttca ggaagtatac tgcctttacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatcct agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacgtgg atgatttgta tgtagggtct gacttagaac tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca yctgttgaag tggggatttt acacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa gtggactgta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgac
//
last modified: Tue May 31 10:56 2022