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LOCUS	    AY030438		    1065 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1121-1997 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030438
VERSION     AY030438.1 GI:13735913
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1065)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1065)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
FEATURES             Location/Qualifiers
     source	     1..1065
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1121-1997"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1065
		     /gene="pol"
     CDS	     <1..>1065
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35253.1"
		     /db_xref="GI:13735914"
		     /translation="PQITLWQRPLVTIRVGGQLTEALLDTGADDTVLEDIDLPGRWKP
		     KMIGGIGGFVKVRQYDQVPIEICGHKVISTVLVGPTPVNIIGRNLMTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVF
		     AIKKKNSDKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDXDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYVDDLYVGSDLELGQHRTKIEELRQHLLKWGFYTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVND"
BASE COUNT	402 a	 176 c	  229 g    256 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctc gtcacaataa gggtaggggg gcaactaacg 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataga tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggttttg tcaaagtaag acagtatgat 
     181 caggtaccca tagaaatatg tggacataaa gttataagta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgatg actcagattg gttgtacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagggtt 
     361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaattg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaagaacag tgataaatgg agaaaattag tagattttag agaacttaat 
     541 aagagaactc aagatttctg ggaagttcaa ttaggaatac cgcatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 raagacttca ggaagtatac tgcctttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatcct agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacgtgg atgatttgta tgtagggtct gacttagaac tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca yctgttgaag tggggatttt acacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa gtggactgta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgac
//
last modified: Tue May 31 10:56 2022


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