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LOCUS	    AM408204		    1592 bp    DNA     linear	VRL 02-MAY-2007
DEFINITION  Human immunodeficiency virus type 2 proviral partial gene for
	    polyprotein, isolate Caio 25
ACCESSION   AM408204
VERSION     AM408204.1 GI:121491518
KEYWORDS    polyprotein; protease; reverse transcriptase.
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Jallow,S., Kaye,S., Schutten,M., Brandin,E., Albert,J.,
	    McConkey,S.J., Corrah,T., Whittle,H., Vanham,G., Rowland-Jones,S.
	    and Janssens,W.
  TITLE     Development and Evaluation of an Oligonucleotide Ligation Assay for
	    Detection of Drug Resistance-Associated Mutations in the Human
	    Immunodeficiency Virus Type 2 pol Gene
  JOURNAL   J. Clin. Microbiol. 45 (5), 1565-1571 (2007)
  PUBMED    17329450
REFERENCE   2 (bases 1 to 1592)
            Show all sequences for reference 2
  AUTHORS   Jallow,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2006) Jallow S., Microbiology, Institute Of
	    Tropical Medicine, Nationalestraat 155, Antwerp 2000, BELGIUM
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Jallow,S., Vincent,T., Leligdowicz,A., De Silva,T., Van Tienen,C.,
	    Alabi,A., Sarge-Njie,R., Aaby,P., Corrah,T., Whittle,H., Jaye,A.,
	    Vanham,G., Rowland-Jones,S. and Janssens,W.
  TITLE     Presence of a multidrug-resistance mutation in an HIV-2 variant
	    infecting a treatment-naive individual in Caio, Guinea Bissau.
  JOURNAL   Clin. Infect. Dis.. 48(12); 1790-3 (2009)
  PUBMED    19438401
COMMENT     GenBank record indicates country as Gambia; however, Jallow et al.
	    [PMID 17329450] indicate that the Caio cohort samples were taken in
	    Guinea Bissau; thus sampling country annotation changed to GW.
FEATURES             Location/Qualifiers
     source	     1..1592
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="Caio 25"
		     /db_xref="taxon:11709"
		     /country="Gambia"
     CDS	     <1..>1592
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="CAL64931.1"
		     /db_xref="GI:121491519"
		     /db_xref="GOA:A1KED2"
		     /db_xref="UniProtKB/TrEMBL:A1KED2"
		     /translation="PQFSLWKRPVVTAHIEGQPVEVLLDTGADDSIVAGIELGSDYSP
		     KIVGGIGGFINTKEYKNVEIKVLNKTVRATIMTGDTPINIFGRNILTALGMSLNLPVA
		     KIEPIKVVLKPGKDGPKLRQWPLTKEKIKALKEICEKMEREGQLEEAPPTNPYNTPTF
		     AIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIP
		     LHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQXTMRQVLEPFKKAHPD
		     VIIIQYMDDILIASDRTDLEHDKVVMQLKELLNSLGFSTPDEKFQKDPPYRWMGYELW
		     PTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKKTLTEEV
		     QWTELAEAELEENKIILSQEQEGHYYQEEKELEATIQKDQDNQWTYKVHQGEKILKVG
		     KYAKVKNTHTNGVRMLAQVIQKVGKEALVIWGRVPKFHLPVERETWEQWWDNYWQVTW
		     IPDWDFVSTPPLVRLVFNLVKDP"
     mat_peptide     1..297
		     /product="protease"
     mat_peptide     298..>1592
		     /product="reverse transcriptase"
BASE COUNT	632 a	 294 c	  343 g    321 t      2 other
ORIGIN
       1 cctcaattct ctctttggaa aagaccagta gtcacagcac acattgaggg tcagccagtg 
      61 gaagttctgt tagacacagg ggctgacgac tcaatagtag cagggataga gttagggagc 
     121 gattatagtc caaaaatagt agggggaata gggggattca taaataccaa agaatacaaa 
     181 aatgtagaaa taaaagtact aaataagaca gtaagagcca ccataatgac aggtgatacc 
     241 ccaatcaaca tttttggcag aaatattctg acagccttag gcatgtcatt aaatttacca 
     301 gtcgccaaga tagaaccaat aaaagtagta ctgaagccag gaaaggatgg accaaaactg 
     361 agacagtggc ccttaacaaa agaaaagata aaagcattaa aagagatctg tgaaaaaatg 
     421 gaaagagagg gacagttaga agaggcacct ccaactaatc cttataatac ccccacattt 
     481 gcaatcaaga agaaggacaa aaacaaatgg aggatgctaa tagatttcag agagctaaac 
     541 aaggtaactc aagacttcac agaaattcag ttaggaattc cacacccagc agggctggcc 
     601 aaaaagagaa gaatcactgt actagatgta ggagatgctt atttttccat accattacat 
     661 gaagatttca gacagtatac tgcatttact ctaccatcag taaacaatgc agaaccagga 
     721 aaaagatata tatataaagt cctaccacag ggatggaagg gatcaccagc aatctttcaa 
     781 trcacaatga gacaggtatt agaaccattc aaaaaagcac acccggatgt cattatcatt 
     841 cagtacatgg acgatatcct aatagctagt gacaggacag atttagagca tgacaaagta 
     901 gtaatgcagc taaaggaact tctaaacagt ctaggatttt ctactccaga tgagaagttc 
     961 caaaaggacc ctccataccg ctggatgggc tatgaactgt ggccaactaa atggaagctg 
    1021 cagaaaatac agctgcccca aaaggaagta tggacagtca atgacatcca aaaactggtg 
    1081 ggtgtcctaa attgggcagc acagatctac ccaggaataa aaaccaaaca cttatgtaga 
    1141 ctaattagag gaaaaaagac actcacagaa gaggtacagt ggacagaatt agcagaagca 
    1201 gagctagaag aaaacaaaat tatyttaagc caggaacaag aaggacacta ttaccaagag 
    1261 gaaaaagaat tagaagcaac aatccagaag gatcaagata atcagtggac atataaagta 
    1321 caccaaggag aaaaaatcct aaaagtagga aaatatgcaa aggtaaaaaa tactcatacc 
    1381 aacggagtca gaatgttagc acaggtaatt caaaaggtag gaaaagaagc actagtcatt 
    1441 tggggacgag tgccaaagtt tcacctacca gtagaaagag aaacctggga acagtggtgg 
    1501 gataattact ggcaggtgac atggatccca gactgggact ttgtatctac cccaccactg 
    1561 gtcaggttag tatttaacct ggtaaaagac cc
//
last modified: Tue May 31 10:56 2022


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