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LOCUS AM408204 1592 bp DNA linear VRL 02-MAY-2007
DEFINITION Human immunodeficiency virus type 2 proviral partial gene for
polyprotein, isolate Caio 25
ACCESSION AM408204
VERSION AM408204.1 GI:121491518
KEYWORDS polyprotein; protease; reverse transcriptase.
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Jallow,S., Kaye,S., Schutten,M., Brandin,E., Albert,J.,
McConkey,S.J., Corrah,T., Whittle,H., Vanham,G., Rowland-Jones,S.
and Janssens,W.
TITLE Development and Evaluation of an Oligonucleotide Ligation Assay for
Detection of Drug Resistance-Associated Mutations in the Human
Immunodeficiency Virus Type 2 pol Gene
JOURNAL J. Clin. Microbiol. 45 (5), 1565-1571 (2007)
PUBMED 17329450
REFERENCE 2 (bases 1 to 1592)
Show all sequences for reference 2
AUTHORS Jallow,S.
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2006) Jallow S., Microbiology, Institute Of
Tropical Medicine, Nationalestraat 155, Antwerp 2000, BELGIUM
REFERENCE 3
Show all sequences for reference 3
AUTHORS Jallow,S., Vincent,T., Leligdowicz,A., De Silva,T., Van Tienen,C.,
Alabi,A., Sarge-Njie,R., Aaby,P., Corrah,T., Whittle,H., Jaye,A.,
Vanham,G., Rowland-Jones,S. and Janssens,W.
TITLE Presence of a multidrug-resistance mutation in an HIV-2 variant
infecting a treatment-naive individual in Caio, Guinea Bissau.
JOURNAL Clin. Infect. Dis.. 48(12); 1790-3 (2009)
PUBMED 19438401
COMMENT GenBank record indicates country as Gambia; however, Jallow et al.
[PMID 17329450] indicate that the Caio cohort samples were taken in
Guinea Bissau; thus sampling country annotation changed to GW.
FEATURES Location/Qualifiers
source 1..1592
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="Caio 25"
/db_xref="taxon:11709"
/country="Gambia"
CDS <1..>1592
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="CAL64931.1"
/db_xref="GI:121491519"
/db_xref="GOA:A1KED2"
/db_xref="UniProtKB/TrEMBL:A1KED2"
/translation="PQFSLWKRPVVTAHIEGQPVEVLLDTGADDSIVAGIELGSDYSP
KIVGGIGGFINTKEYKNVEIKVLNKTVRATIMTGDTPINIFGRNILTALGMSLNLPVA
KIEPIKVVLKPGKDGPKLRQWPLTKEKIKALKEICEKMEREGQLEEAPPTNPYNTPTF
AIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIP
LHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQXTMRQVLEPFKKAHPD
VIIIQYMDDILIASDRTDLEHDKVVMQLKELLNSLGFSTPDEKFQKDPPYRWMGYELW
PTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKKTLTEEV
QWTELAEAELEENKIILSQEQEGHYYQEEKELEATIQKDQDNQWTYKVHQGEKILKVG
KYAKVKNTHTNGVRMLAQVIQKVGKEALVIWGRVPKFHLPVERETWEQWWDNYWQVTW
IPDWDFVSTPPLVRLVFNLVKDP"
mat_peptide 1..297
/product="protease"
mat_peptide 298..>1592
/product="reverse transcriptase"
BASE COUNT 632 a 294 c 343 g 321 t 2 other
ORIGIN
1 cctcaattct ctctttggaa aagaccagta gtcacagcac acattgaggg tcagccagtg
61 gaagttctgt tagacacagg ggctgacgac tcaatagtag cagggataga gttagggagc
121 gattatagtc caaaaatagt agggggaata gggggattca taaataccaa agaatacaaa
181 aatgtagaaa taaaagtact aaataagaca gtaagagcca ccataatgac aggtgatacc
241 ccaatcaaca tttttggcag aaatattctg acagccttag gcatgtcatt aaatttacca
301 gtcgccaaga tagaaccaat aaaagtagta ctgaagccag gaaaggatgg accaaaactg
361 agacagtggc ccttaacaaa agaaaagata aaagcattaa aagagatctg tgaaaaaatg
421 gaaagagagg gacagttaga agaggcacct ccaactaatc cttataatac ccccacattt
481 gcaatcaaga agaaggacaa aaacaaatgg aggatgctaa tagatttcag agagctaaac
541 aaggtaactc aagacttcac agaaattcag ttaggaattc cacacccagc agggctggcc
601 aaaaagagaa gaatcactgt actagatgta ggagatgctt atttttccat accattacat
661 gaagatttca gacagtatac tgcatttact ctaccatcag taaacaatgc agaaccagga
721 aaaagatata tatataaagt cctaccacag ggatggaagg gatcaccagc aatctttcaa
781 trcacaatga gacaggtatt agaaccattc aaaaaagcac acccggatgt cattatcatt
841 cagtacatgg acgatatcct aatagctagt gacaggacag atttagagca tgacaaagta
901 gtaatgcagc taaaggaact tctaaacagt ctaggatttt ctactccaga tgagaagttc
961 caaaaggacc ctccataccg ctggatgggc tatgaactgt ggccaactaa atggaagctg
1021 cagaaaatac agctgcccca aaaggaagta tggacagtca atgacatcca aaaactggtg
1081 ggtgtcctaa attgggcagc acagatctac ccaggaataa aaaccaaaca cttatgtaga
1141 ctaattagag gaaaaaagac actcacagaa gaggtacagt ggacagaatt agcagaagca
1201 gagctagaag aaaacaaaat tatyttaagc caggaacaag aaggacacta ttaccaagag
1261 gaaaaagaat tagaagcaac aatccagaag gatcaagata atcagtggac atataaagta
1321 caccaaggag aaaaaatcct aaaagtagga aaatatgcaa aggtaaaaaa tactcatacc
1381 aacggagtca gaatgttagc acaggtaatt caaaaggtag gaaaagaagc actagtcatt
1441 tggggacgag tgccaaagtt tcacctacca gtagaaagag aaacctggga acagtggtgg
1501 gataattact ggcaggtgac atggatccca gactgggact ttgtatctac cccaccactg
1561 gtcaggttag tatttaacct ggtaaaagac cc
//
last modified: Tue May 31 10:56 2022