View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AM260234 1788 bp DNA linear VRL 02-FEB-2007
DEFINITION Human immunodeficiency virus type 1 proviral partial gene for
gag-pol fusion polyprotein precursor, isolate 02BU.U2025
ACCESSION AM260234
VERSION AM260234.1 GI:124482920
KEYWORDS gag polyprotein; gag-pol fusion; pol polyprotein.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Vidal,N., Niyongabo,T., Nduwimana,J., Butel,C., Ndayiragije,A.,
Wakana,J., Nduwimana,M., Delaporte,E. and Peeters,M.
TITLE HIV Type 1 Diversity and Antiretroviral Drug Resistance Mutations
in Burundi
JOURNAL AIDS Res. Hum. Retroviruses 23 (1), 175-180 (2007)
PUBMED 17263648
REFERENCE 2 (bases 1 to 1788)
Show all sequences for reference 2
AUTHORS Vidal,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2006) Vidal N., UMR145, I.R.D, 911 avenue
Agropolis, 34394 Montpellier, FRANCE
FEATURES Location/Qualifiers
source 1..1788
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="02BU.U2025"
/db_xref="taxon:11676"
/country="Burundi"
/note="subtype: C"
CDS <1..>1788
/codon_start="1"
/transl_table="1"
/product="gag-pol fusion polyprotein precursor"
/protein_id="CAK18247.1"
/db_xref="GI:124482921"
/translation="FFRENLAFPQGEAREFPPEQTRANSPTSRELQVRGDNPLSEAGA
PLSDTGAERQEPLQGTLNCPQITLWQRPLVTIRVAGQLKEALLDTGADDTVLEEIKLP
GNWKPKMIGGIGGFIKVRQYDQITIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTL
NFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEDMEKEGKISKIGPENPY
NTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDA
YFSVPLDESFRKYTAFTIPSXNNETPGVRYQYNVLPQGWKGSPXIFQSSMTKILEPFR
AQNPEIVIYQYMDDLYVGSDLEIGQHRAKIEKLREHLLRWGFTTPDKKHQKEPPFLWM
GYELHPDKWTVQPIQLPNKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKA
LTDVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGNDQWTYQIYQEPF
KNLKTGKYAKMRTAHTNDVKQLTEAVQKIAQECIVIWGKTPKFRLPIQXETWETWWTD
YWQATWIPEWEFVNTPPLVKLWYQLETEPI"
BASE COUNT 678 a 330 c 390 g 378 t 12 other
ORIGIN
1 ttttttaggg aaaatttggc cttcccacaa ggggaggcca gggaatttcc tccagagcag
61 accagagcca acagccccac cagcagagag cttcaagttc gaggagacaa ccccctctca
121 gaagcaggag cccccctctc tgacacagga gcagaaagac aagaacccct acagggaacc
181 cttaactgcc ctcaaatcac tctttggcag cgaccccttg tcacaataag agtagcggga
241 cagctaaagg aagctctctt agacacagga gcagatgata cagtgttaga agaaataaaa
301 ttaccaggaa attggaaacc aaaaatgata ggaggaattg gaggttttat caaagtaaga
361 cagtatgatc aaataactat agaaatatgt ggaaaaaagg ctataggtac agtactagta
421 ggacctacac ctgtcaacat aattggaaga aatatgttga ctcagcttgg atgcacacta
481 aattttccaa ttagtcctat tgaaactgta ccagtaaaat taaagccagg aatggatggc
541 ccaaaggtca aacaatggcc cttgacagaa gagaaaataa aagcattaac agagatttgt
601 gaagacatgg aaaaggaagg aaaaatttca aaaattgggc ctgaaaaccc atataacact
661 ccagtatttg ccataaaaaa gaaggacagt actaaatgga gaaaattagt agatttcagg
721 gaactcaata agaggactca agayttttgg gaagttcaat tagggatacc acacccagca
781 gggttaaaaa agaaaaaatc agtgacagta ctggatgtgg gggatgcata tttttcagtt
841 cctttagatg aaagcttcag gaaatatact gcattcacca tacctagtay aaacaatgaa
901 acaccagggg ttagatatca atataatgtg cttccwcagg gatggaaagg atcaccakca
961 atattccaga gtagcatgac aaaaatctta gagcccttta gggcacaaaa cccagaaata
1021 gtcatctatc aatatatgga tgacttgtat gtaggatctg acttagaaat agggcaacat
1081 agagcaaaaa tagagaagtt aagagaacat ctattgaggt gggggtttac cacaccagac
1141 aagaarcatc agaaagaacc tccatttctt tggatggggt atgaactcca tcctgacaaa
1201 tggacagtac agcctataca gctgccaaac aaggagagct ggactgtcaa tgatatacag
1261 aagttagtgg gaaaattaaa ctgggcaagt cagatttacc cagggattaa agtaagacaa
1321 ctgtgtaaac tccttagagg agccaaagca ctaacagayg tagtaccact gactgaagaa
1381 gcagaattag aattggcaga gaacagggaa attctaaaag aaccagtaca tggagtatat
1441 tatgayccat caaaagactt aatagctgaa ttacagaaac agggaaatga tcaatggaca
1501 tatcaaattt aycaagagcc atttaaraat ctgaaaacag ggaartatgc aaaaatgagg
1561 actgcccaca ctaatgatgt gaaacagtta acagaggcag tgcaaaaaat agcycaggaa
1621 tgcatagtaa tatggggaaa gactcctaaa tttagattac ccatccagar agaaacatgg
1681 gagacatggt ggacagacta ttggcaagcc acctggattc ctgagtggga gtttgttaat
1741 acccctcccc tagtaaagtt atggtaccag ctagagacag aacccata
//
last modified: Tue May 31 10:56 2022