View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AM260219 1767 bp DNA linear VRL 02-FEB-2007
DEFINITION Human immunodeficiency virus type 1 proviral partial gene for
gag-pol fusion polyprotein precursor, isolate 02BU.U0118
ACCESSION AM260219
VERSION AM260219.1 GI:124482891
KEYWORDS gag polyprotein; gag-pol fusion; pol polyprotein.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Vidal,N., Niyongabo,T., Nduwimana,J., Butel,C., Ndayiragije,A.,
Wakana,J., Nduwimana,M., Delaporte,E. and Peeters,M.
TITLE HIV Type 1 Diversity and Antiretroviral Drug Resistance Mutations
in Burundi
JOURNAL AIDS Res. Hum. Retroviruses 23 (1), 175-180 (2007)
PUBMED 17263648
REFERENCE 2 (bases 1 to 1767)
Show all sequences for reference 2
AUTHORS Vidal,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2006) Vidal N., UMR145, I.R.D, 911 avenue
Agropolis, 34394 Montpellier, FRANCE
FEATURES Location/Qualifiers
source 1..1767
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="02BU.U0118"
/db_xref="taxon:11676"
/country="Burundi"
/note="subtype: C"
CDS <1..>1767
/codon_start="1"
/transl_table="1"
/product="gag-pol fusion polyprotein precursor"
/protein_id="CAK18232.1"
/db_xref="GI:124482892"
/translation="FFRENLAFQQGEAREFPSEQTRANSPTSRANSPTSRELQVRGDS
PLLEAGADRQGALNFPQITLWQRPLVEIRVEGQLREALLDTGADDTVLEDINLPGKWK
PKMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPI
SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEDMEKEGKISRIGPENPYNTPV
FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSV
PLDEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTQNP
EIVIYQYMDDLYVGSDLEIGQHRAKIEELRKHLLRWGFTTPDKKHQKEPPFLWMGYEL
HPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDI
VSLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPFKNLK
TGKYAKRRTAHTNDVKQLTEAVQKIALESIVIWGKTPKFRLPIQKETWEAWWTDYWQA
TWIPEWEFVNTPPLVKLWYQLEK"
BASE COUNT 670 a 327 c 393 g 377 t
ORIGIN
1 ttttttaggg agaatttggc cttccaacaa ggggaggcca gggaatttcc ttcagagcag
61 accagagcca acagccccac cagtagagcc aacagcccca ccagcagaga gcttcaggtt
121 cgaggagaca gccccctcct cgaagcagga gccgacagac aaggagccct taatttccct
181 caaatcactc tttggcagcg accccttgtc gaaataagag tagagggaca gctaagagag
241 gctctcttag acacaggagc agatgacaca gtattagaag acataaattt gccaggaaaa
301 tggaaaccaa aaatgatagg gggaattgga ggttttatta aagtaagaca gtatgatcag
361 atacttatag aaatctgtgg aaaaaaggct ataggtacag tactagtagg acctacacct
421 gtcaacataa ttggaaggaa tatgttgact cagcttggat gcacactaaa ttttccaatt
481 agtcccattg aaactgtacc agtaaaatta aagccaggaa tggatggccc aaaagtcaaa
541 caatggccat tgacagaaga gaaaataaaa gcattaacag caatttgtga agatatggaa
601 aaggaaggaa aaatttcaag aattgggcct gaaaatccat ataacactcc agtatttgcc
661 ataaaaaaga aggacagtac taagtggaga aaattagtag atttcaggga actcaataaa
721 agaactcaag acttttggga agttcaatta gggataccac acccagcagg gttaaaaaag
781 aaaaaatcag tgacagtact ggatgtgggg gatgcatatt tctcagtccc tttagatgaa
841 ggcttcagga aatatactgc attcaccata cctagtacaa acaatgaaac accagggatt
901 agatatcaat ataatgtact tccacaggga tggaagggat caccagcaat attccagagt
961 agcatgacaa aaattttaga gccctttagg acacaaaacc cagaaatagt tatctaccaa
1021 tatatggatg acttgtatgt aggatctgat ttagaaatag ggcaacatag agcaaaaata
1081 gaggagttaa gaaaacatct attgaggtgg ggatttacca cacccgacaa gaaacatcaa
1141 aaagaaccgc catttctttg gatggggtat gaacttcatc ctgacaaatg gacagtacag
1201 cctatacagc tgccagaaaa ggatagctgg actgtcaatg atatacagaa gttagtagga
1261 aaattaaact gggcaagtca gatttaccca ggaattaaag taaagcaact gtgtaagctc
1321 cttaggggag ccaaagcact aacagacata gtatcattga ctgaagaagc agaattagaa
1381 ttggcagaga acagggaaat tctaaaagaa ccagtacatg gagtatatta tgacccctca
1441 aaagacttaa tagctgaaat acagaaacag gggcatgacc aatggacata tcaaatttac
1501 caagaaccat tcaaaaacct gaaaacaggg aagtatgcaa aaagaaggac tgcccacact
1561 aatgatgtaa aacagttaac agaggcagtg caaaagatag ccctggaaag catagtaata
1621 tggggaaaga ctcctaaatt tagattaccc atccagaaag aaacatggga ggcatggtgg
1681 acagactatt ggcaagccac ctggattcct gagtgggagt ttgttaatac ccctccccta
1741 gtaaagttat ggtaccagct ggaaaaa
//
last modified: Tue May 31 10:56 2022