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LOCUS AJ583753 1817 bp RNA linear VRL 15-APR-2005
DEFINITION Human immunodeficiency virus 1 partial pol gene for protease-rt,
genomic RNA, isolate 99SN-74HALD(24/12/99)
ACCESSION AJ583753
VERSION AJ583753.1 GI:37050995
KEYWORDS acquired immune deficiency syndrome; pol gene; protease-rt.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Vergne,L., Kane,C.T., Laurent,C., Diakhate,N., Gueye,N.F.,
Gueye,P.M., Sow,P.S., Faye,M.A., Liegeois,F., Ndir,A., Laniece,I.,
Peeters,M., Ndoye,I., Mboup,S. and Delaporte,E.
TITLE Low rate of genotypic HIV-1 drug-resistant strains in the
Senegalese government initiative of access to antiretroviral
therapy
JOURNAL AIDS 17 SUPPL 3, S31-S38 (2003)
PUBMED 14565607
REFERENCE 2 (bases 1 to 1817)
Show all sequences for reference 2
AUTHORS Vergne,L.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2003) Vergne L., UR36, IRD, 911 Av. Agropolis
BP64501, 34394 Montpellier cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1..1817
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="99SN-74HALD(24/12/99)"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Senegal"
gene <52..>1817
/gene="pol"
CDS <52..>1817
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="protease-rt"
/protein_id="CAE47603.1"
/db_xref="GI:37050996"
/db_xref="GOA:Q70EN1"
/db_xref="HSSP:P04584"
/db_xref="InterPro:IPR000477"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR001995"
/db_xref="InterPro:IPR009007"
/db_xref="InterPro:IPR010659"
/db_xref="InterPro:IPR010661"
/db_xref="UniProtKB/TrEMBL:Q70EN1"
/translation="FRENLAFQQGEARKFSPEQTGTNSPSSRELGNGGRDNLPSEAGT
GGQGIISSLNFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEEINLPGKWKPKMI
GGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIE
TVPVKLKPGMDGPKVKQWPLTEEKIKALLDICTEMEKEGKISKIGPENPYNTPVFAIK
KKDNTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDQ
DFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILDPFRAKNPEIVI
YQYMDDLYVGSDLQIGQHRAKIEELREHLLKWGFYTPDKKHQKEPPFLWMGYELHPDK
WTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYAGIKIRQLCKLLRGAKALTEVVTLT
EEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKY
AKKKSAHTNDVKQLTEVVQKVATESIVIWGKTPKFKLPIQKETWEAWWMEYWQATWIP
EWEFVNTPPLVKLWYQLENDPI"
BASE COUNT 698 a 320 c 400 g 399 t
ORIGIN
1 tgtggaaagg aaggacacca aatgaaagac tgtactgaaa gacaggctaa ttttttaggg
61 aaaatctggc cttccagcaa ggggaggcca ggaaattttc cccagagcag accggaacca
121 acagcccctc cagcagagag cttgggaatg ggggaagaga taacctcccc tccgaagcag
181 gaaccggggg acaagggatt atatcctccc ttaacttccc tcaaatcact ctttggcaac
241 gacccttagt cacagtaaaa ataggggggc agttaataga agccctatta gacacagggg
301 cagatgatac agtattagaa gaaataaatt taccaggaaa atggaaacca aaaatgatag
361 ggggaattgg aggttttatc aaagtaaggc agtatgatca gatacttatg gaaatttgtg
421 gaaaaaaggc cataggtaca gtgttagtag gacctacacc tgtcaacata attggacgaa
481 acatgttgac tcagattggt tgtactttaa attttccaat tagtcctatt gaaacagtgc
541 cagtaaaatt aaagccagga atggatggcc caaaggttaa gcaatggcca ttgacagaag
601 aaaaaataaa agcattacta gacatttgta cagagatgga aaaggaagga aaaatttcaa
661 aaattgggcc tgaaaatcca tacaatactc cagtatttgc cataaagaaa aaagataata
721 ctaaatggag aaaattagta gatttcagag agctcaataa aagaactcaa gacttctggg
781 aaatccaatt aggcatacct catcccgcgg ggttaaaaaa gaaaaaatca gtaacagtac
841 tagatgtggg ggatgcatac ttttcagttc ctttggatca agactttaga aagtatactg
901 cattcactat acctagtgta aataatgaaa caccagggat tagatatcag tacaatgtgc
961 ttccacaggg atggaaagga tccccagcaa tatttcaggc aagcatgaca aagatcttag
1021 atccctttag agcaaaaaat ccagagatag tgatctacca atatatggat gatttatatg
1081 taggatctga cttacagata ggacagcata gagcaaaaat agaagagtta agagaacatc
1141 tactgaaatg gggattttac acaccagaca aaaaacatca gaaagaacct ccatttcttt
1201 ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatacag ctgccagata
1261 aagagagctg gactgtcaat gacatacaga aattagtggg aaaactcaat tgggcaagtc
1321 agatttatgc aggaattaag ataaggcaac tgtgtaaact cctcagggga gccaaagcac
1381 taacagaggt agtaacactg actgaggagg cagaattaga attggcagag aacagggaaa
1441 ttctaaaaga acctgtacat ggagtatatt atgacccaac aaaagactta gtagcagaaa
1501 tacagaaaca agggcaagac caatggacat atcaaattta tcaggagcca tttaaaaatc
1561 taaaaacagg aaaatatgca aaaaagaagt ctgcccacac taatgatgta aaacaattaa
1621 cagaggtagt gcaaaaggtg gctacagaaa gcatagtcat atggggaaag acccctaaat
1681 ttaaactacc tatacaaaaa gaaacatggg aagcatggtg gatggagtat tggcaggcta
1741 cctggattcc tgaatgggag tttgtcaata ccccccctct agtaaaatta tggtaccagt
1801 tagaaaacga ccccata
//
last modified: Tue May 31 10:56 2022