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LOCUS	    AJ583753		    1817 bp    RNA     linear	VRL 15-APR-2005
DEFINITION  Human immunodeficiency virus 1 partial pol gene for protease-rt,
	    genomic RNA, isolate 99SN-74HALD(24/12/99)
ACCESSION   AJ583753
VERSION     AJ583753.1 GI:37050995
KEYWORDS    acquired immune deficiency syndrome; pol gene; protease-rt.
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Vergne,L., Kane,C.T., Laurent,C., Diakhate,N., Gueye,N.F.,
	    Gueye,P.M., Sow,P.S., Faye,M.A., Liegeois,F., Ndir,A., Laniece,I.,
	    Peeters,M., Ndoye,I., Mboup,S. and Delaporte,E.
  TITLE     Low rate of genotypic HIV-1 drug-resistant strains in the
	    Senegalese government initiative of access to antiretroviral
	    therapy
  JOURNAL   AIDS 17 SUPPL 3, S31-S38 (2003)
  PUBMED    14565607
REFERENCE   2 (bases 1 to 1817)
            Show all sequences for reference 2
  AUTHORS   Vergne,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2003) Vergne L., UR36, IRD, 911 Av. Agropolis
	    BP64501, 34394 Montpellier cedex 5, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1817
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="99SN-74HALD(24/12/99)"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Senegal"
     gene	     <52..>1817
		     /gene="pol"
     CDS	     <52..>1817
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="protease-rt"
		     /protein_id="CAE47603.1"
		     /db_xref="GI:37050996"
		     /db_xref="GOA:Q70EN1"
		     /db_xref="HSSP:P04584"
		     /db_xref="InterPro:IPR000477"
		     /db_xref="InterPro:IPR001969"
		     /db_xref="InterPro:IPR001995"
		     /db_xref="InterPro:IPR009007"
		     /db_xref="InterPro:IPR010659"
		     /db_xref="InterPro:IPR010661"
		     /db_xref="UniProtKB/TrEMBL:Q70EN1"
		     /translation="FRENLAFQQGEARKFSPEQTGTNSPSSRELGNGGRDNLPSEAGT
		     GGQGIISSLNFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEEINLPGKWKPKMI
		     GGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIE
		     TVPVKLKPGMDGPKVKQWPLTEEKIKALLDICTEMEKEGKISKIGPENPYNTPVFAIK
		     KKDNTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDQ
		     DFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILDPFRAKNPEIVI
		     YQYMDDLYVGSDLQIGQHRAKIEELREHLLKWGFYTPDKKHQKEPPFLWMGYELHPDK
		     WTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYAGIKIRQLCKLLRGAKALTEVVTLT
		     EEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKY
		     AKKKSAHTNDVKQLTEVVQKVATESIVIWGKTPKFKLPIQKETWEAWWMEYWQATWIP
		     EWEFVNTPPLVKLWYQLENDPI"
BASE COUNT	698 a	 320 c	  400 g    399 t
ORIGIN
       1 tgtggaaagg aaggacacca aatgaaagac tgtactgaaa gacaggctaa ttttttaggg 
      61 aaaatctggc cttccagcaa ggggaggcca ggaaattttc cccagagcag accggaacca 
     121 acagcccctc cagcagagag cttgggaatg ggggaagaga taacctcccc tccgaagcag 
     181 gaaccggggg acaagggatt atatcctccc ttaacttccc tcaaatcact ctttggcaac 
     241 gacccttagt cacagtaaaa ataggggggc agttaataga agccctatta gacacagggg 
     301 cagatgatac agtattagaa gaaataaatt taccaggaaa atggaaacca aaaatgatag 
     361 ggggaattgg aggttttatc aaagtaaggc agtatgatca gatacttatg gaaatttgtg 
     421 gaaaaaaggc cataggtaca gtgttagtag gacctacacc tgtcaacata attggacgaa 
     481 acatgttgac tcagattggt tgtactttaa attttccaat tagtcctatt gaaacagtgc 
     541 cagtaaaatt aaagccagga atggatggcc caaaggttaa gcaatggcca ttgacagaag 
     601 aaaaaataaa agcattacta gacatttgta cagagatgga aaaggaagga aaaatttcaa 
     661 aaattgggcc tgaaaatcca tacaatactc cagtatttgc cataaagaaa aaagataata 
     721 ctaaatggag aaaattagta gatttcagag agctcaataa aagaactcaa gacttctggg 
     781 aaatccaatt aggcatacct catcccgcgg ggttaaaaaa gaaaaaatca gtaacagtac 
     841 tagatgtggg ggatgcatac ttttcagttc ctttggatca agactttaga aagtatactg 
     901 cattcactat acctagtgta aataatgaaa caccagggat tagatatcag tacaatgtgc 
     961 ttccacaggg atggaaagga tccccagcaa tatttcaggc aagcatgaca aagatcttag 
    1021 atccctttag agcaaaaaat ccagagatag tgatctacca atatatggat gatttatatg 
    1081 taggatctga cttacagata ggacagcata gagcaaaaat agaagagtta agagaacatc 
    1141 tactgaaatg gggattttac acaccagaca aaaaacatca gaaagaacct ccatttcttt 
    1201 ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatacag ctgccagata 
    1261 aagagagctg gactgtcaat gacatacaga aattagtggg aaaactcaat tgggcaagtc 
    1321 agatttatgc aggaattaag ataaggcaac tgtgtaaact cctcagggga gccaaagcac 
    1381 taacagaggt agtaacactg actgaggagg cagaattaga attggcagag aacagggaaa 
    1441 ttctaaaaga acctgtacat ggagtatatt atgacccaac aaaagactta gtagcagaaa 
    1501 tacagaaaca agggcaagac caatggacat atcaaattta tcaggagcca tttaaaaatc 
    1561 taaaaacagg aaaatatgca aaaaagaagt ctgcccacac taatgatgta aaacaattaa 
    1621 cagaggtagt gcaaaaggtg gctacagaaa gcatagtcat atggggaaag acccctaaat 
    1681 ttaaactacc tatacaaaaa gaaacatggg aagcatggtg gatggagtat tggcaggcta 
    1741 cctggattcc tgaatgggag tttgtcaata ccccccctct agtaaaatta tggtaccagt 
    1801 tagaaaacga ccccata
//
last modified: Tue May 31 10:56 2022


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