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LOCUS	    AJ583711		    1832 bp    RNA     linear	VRL 15-APR-2005
DEFINITION  Human immunodeficiency virus 1 partial pol gene for protease-rt,
	    genomic RNA, isolate 99SN-123HALD(16/4/99)
ACCESSION   AJ583711
VERSION     AJ583711.1 GI:37050914
KEYWORDS    acquired immune deficiency syndrome; pol gene; protease-rt.
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Vergne,L., Kane,C.T., Laurent,C., Diakhate,N., Gueye,N.F.,
	    Gueye,P.M., Sow,P.S., Faye,M.A., Liegeois,F., Ndir,A., Laniece,I.,
	    Peeters,M., Ndoye,I., Mboup,S. and Delaporte,E.
  TITLE     Low rate of genotypic HIV-1 drug-resistant strains in the
	    Senegalese government initiative of access to antiretroviral
	    therapy
  JOURNAL   AIDS 17 SUPPL 3, S31-S38 (2003)
  PUBMED    14565607
REFERENCE   2 (bases 1 to 1832)
            Show all sequences for reference 2
  AUTHORS   Vergne,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2003) Vergne L., UR36, IRD, 911 Av. Agropolis
	    BP64501, 34394 Montpellier cedex 5, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1832
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="99SN-123HALD(16/4/99)"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Senegal"
     gene	     <54..>1832
		     /gene="pol"
     CDS	     <54..>1832
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="protease-rt"
		     /protein_id="CAE47561.1"
		     /db_xref="GI:37050915"
		     /db_xref="GOA:Q70ES0"
		     /db_xref="HSSP:P04584"
		     /db_xref="InterPro:IPR000477"
		     /db_xref="InterPro:IPR001969"
		     /db_xref="InterPro:IPR001995"
		     /db_xref="InterPro:IPR009007"
		     /db_xref="InterPro:IPR010659"
		     /db_xref="InterPro:IPR010661"
		     /db_xref="UniProtKB/TrEMBL:Q70ES0"
		     /translation="FRENLAFQQGEARKFSSEQTGTNSPTSRELWDGGRNNLLSEAGT
		     GGQGTISSFSFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEKIELPGKWKPKMI
		     GGIGGFIKVRQYDQILIEICGKKAIGTVLIGPTPVNIIGRNMLTQIGCTLNFPISPIE
		     TVPVKLKPGMDGPKVKQWPLAEEKIKALTDICAEMEKEGKISRVGPENPYNTPIFAIK
		     KKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDK
		     DFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPEMVI
		     YQYMDDLYVGSDLEIGQHRAKIEELREHLLSWGFTTPDNKHQKEPPFLWMGYELHPDK
		     WTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLT
		     EEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKY
		     AKKRSAHTNDVKQLTEVVQKVGIESIVIWGKTPKFRLPIQRDTWEAWWMEYWQATWIP
		     EWEFVNTPPLVKLWYQLEKDPIVGAE"
BASE COUNT	707 a	 314 c	  410 g    401 t
ORIGIN
       1 attgtggaaa ggaaggacac caaatgaaag actgcactga gagacaggct aattttttag 
      61 ggaaaatttg gccttccagc aaggggaggc caggaaattt tcctcagagc agaccggaac 
     121 caacagcccc accagcagag agctttggga tgggggaaga aacaacctcc tctcagaagc 
     181 aggaaccggg ggacaaggga ctatatcctc ctttagtttc cctcaaatca ctctttggca 
     241 acgaccctta gtcacagtaa aaataggggg acagctaata gaagccctat tagatacagg 
     301 agcagatgat acagtattag aaaaaataga gttaccagga aaatggaaac caaaaatgat 
     361 agggggaatt ggaggtttta tcaaagtaag acagtatgat cagatactta tagaaatttg 
     421 tggaaaaaag gccataggta cagtattaat aggacctaca cctgtcaaca taattggacg 
     481 aaatatgttg actcagattg gttgtacttt aaattttcca attagtccta ttgaaaccgt 
     541 gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt aaacaatggc cattggcaga 
     601 agaaaaaata aaagcattaa cagacatttg tgcagagatg gaaaaggaag gaaaaatttc 
     661 aagagttggg cctgaaaatc catacaatac tccaatattt gccataaaga aaaaagatgg 
     721 tactaaatgg agaaaattag tagatttcag agaactcaat aagagaactc aagacttctg 
     781 ggaggtccag ttaggaatac ctcatcccgc gggattaaaa aagaaaaaat cagtaacagt 
     841 actagatgtg ggggatgcat atttttcagt tcccttagat aaagacttta gaaagtatac 
     901 tgcattcact atacctagtg taaataatga gacaccaggg attagatatc agtacaatgt 
     961 gcttccacag ggatggaaag gatcaccagc aatatttcag gcaagcatga caaaaatctt 
    1021 agagcccttt agaacaaaaa atccagaaat ggtgatctac caatatatgg atgatttata 
    1081 tgtaggatca gacttagaga tagggcagca tagagcaaaa atagaagagt tgagggaaca 
    1141 tctactgagc tggggattta ccacaccaga caacaaacat cagaaagaac ctccatttct 
    1201 ttggatggga tatgaactcc atcctgacaa atggacagtt cagcctatac agctgccaga 
    1261 caaagacagc tggactgtca atgatataca gaaattagtg ggaaaactaa attgggcaag 
    1321 tcaaatttat gcgggaatta aagtaaagca actgtgtaaa ctcctcaggg gagccaaagc 
    1381 actaacagat atagtaacac tgactgagga agcagaatta gaactggcag agaacaggga 
    1441 aattttaaaa gaaccagtac atggagtata ttatgacccc acaaaagact tagtagcaga 
    1501 aatacagaaa caagggcaag accaatggac atatcaaatt tatcaagagc catttaagaa 
    1561 tctaaaaaca ggaaaatatg caaaaaagag gtctgcccac actaatgatg taaaacaatt 
    1621 aacagaggta gtgcaaaaag tgggtataga aagcatagta atatggggaa agacccctaa 
    1681 atttagacta cccatacaaa gagacacatg ggaagcatgg tggatggagt attggcaggc 
    1741 tacctggatt cctgagtggg agtttgtcaa tacccctcct ctagtaaaat tatggtacca 
    1801 gttagaaaaa gaccccatag taggagcaga aa
//
last modified: Tue May 31 10:56 2022


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