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LOCUS AJ583711 1832 bp RNA linear VRL 15-APR-2005
DEFINITION Human immunodeficiency virus 1 partial pol gene for protease-rt,
genomic RNA, isolate 99SN-123HALD(16/4/99)
ACCESSION AJ583711
VERSION AJ583711.1 GI:37050914
KEYWORDS acquired immune deficiency syndrome; pol gene; protease-rt.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Vergne,L., Kane,C.T., Laurent,C., Diakhate,N., Gueye,N.F.,
Gueye,P.M., Sow,P.S., Faye,M.A., Liegeois,F., Ndir,A., Laniece,I.,
Peeters,M., Ndoye,I., Mboup,S. and Delaporte,E.
TITLE Low rate of genotypic HIV-1 drug-resistant strains in the
Senegalese government initiative of access to antiretroviral
therapy
JOURNAL AIDS 17 SUPPL 3, S31-S38 (2003)
PUBMED 14565607
REFERENCE 2 (bases 1 to 1832)
Show all sequences for reference 2
AUTHORS Vergne,L.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2003) Vergne L., UR36, IRD, 911 Av. Agropolis
BP64501, 34394 Montpellier cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1..1832
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="99SN-123HALD(16/4/99)"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Senegal"
gene <54..>1832
/gene="pol"
CDS <54..>1832
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="protease-rt"
/protein_id="CAE47561.1"
/db_xref="GI:37050915"
/db_xref="GOA:Q70ES0"
/db_xref="HSSP:P04584"
/db_xref="InterPro:IPR000477"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR001995"
/db_xref="InterPro:IPR009007"
/db_xref="InterPro:IPR010659"
/db_xref="InterPro:IPR010661"
/db_xref="UniProtKB/TrEMBL:Q70ES0"
/translation="FRENLAFQQGEARKFSSEQTGTNSPTSRELWDGGRNNLLSEAGT
GGQGTISSFSFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEKIELPGKWKPKMI
GGIGGFIKVRQYDQILIEICGKKAIGTVLIGPTPVNIIGRNMLTQIGCTLNFPISPIE
TVPVKLKPGMDGPKVKQWPLAEEKIKALTDICAEMEKEGKISRVGPENPYNTPIFAIK
KKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDK
DFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPEMVI
YQYMDDLYVGSDLEIGQHRAKIEELREHLLSWGFTTPDNKHQKEPPFLWMGYELHPDK
WTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLT
EEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKY
AKKRSAHTNDVKQLTEVVQKVGIESIVIWGKTPKFRLPIQRDTWEAWWMEYWQATWIP
EWEFVNTPPLVKLWYQLEKDPIVGAE"
BASE COUNT 707 a 314 c 410 g 401 t
ORIGIN
1 attgtggaaa ggaaggacac caaatgaaag actgcactga gagacaggct aattttttag
61 ggaaaatttg gccttccagc aaggggaggc caggaaattt tcctcagagc agaccggaac
121 caacagcccc accagcagag agctttggga tgggggaaga aacaacctcc tctcagaagc
181 aggaaccggg ggacaaggga ctatatcctc ctttagtttc cctcaaatca ctctttggca
241 acgaccctta gtcacagtaa aaataggggg acagctaata gaagccctat tagatacagg
301 agcagatgat acagtattag aaaaaataga gttaccagga aaatggaaac caaaaatgat
361 agggggaatt ggaggtttta tcaaagtaag acagtatgat cagatactta tagaaatttg
421 tggaaaaaag gccataggta cagtattaat aggacctaca cctgtcaaca taattggacg
481 aaatatgttg actcagattg gttgtacttt aaattttcca attagtccta ttgaaaccgt
541 gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt aaacaatggc cattggcaga
601 agaaaaaata aaagcattaa cagacatttg tgcagagatg gaaaaggaag gaaaaatttc
661 aagagttggg cctgaaaatc catacaatac tccaatattt gccataaaga aaaaagatgg
721 tactaaatgg agaaaattag tagatttcag agaactcaat aagagaactc aagacttctg
781 ggaggtccag ttaggaatac ctcatcccgc gggattaaaa aagaaaaaat cagtaacagt
841 actagatgtg ggggatgcat atttttcagt tcccttagat aaagacttta gaaagtatac
901 tgcattcact atacctagtg taaataatga gacaccaggg attagatatc agtacaatgt
961 gcttccacag ggatggaaag gatcaccagc aatatttcag gcaagcatga caaaaatctt
1021 agagcccttt agaacaaaaa atccagaaat ggtgatctac caatatatgg atgatttata
1081 tgtaggatca gacttagaga tagggcagca tagagcaaaa atagaagagt tgagggaaca
1141 tctactgagc tggggattta ccacaccaga caacaaacat cagaaagaac ctccatttct
1201 ttggatggga tatgaactcc atcctgacaa atggacagtt cagcctatac agctgccaga
1261 caaagacagc tggactgtca atgatataca gaaattagtg ggaaaactaa attgggcaag
1321 tcaaatttat gcgggaatta aagtaaagca actgtgtaaa ctcctcaggg gagccaaagc
1381 actaacagat atagtaacac tgactgagga agcagaatta gaactggcag agaacaggga
1441 aattttaaaa gaaccagtac atggagtata ttatgacccc acaaaagact tagtagcaga
1501 aatacagaaa caagggcaag accaatggac atatcaaatt tatcaagagc catttaagaa
1561 tctaaaaaca ggaaaatatg caaaaaagag gtctgcccac actaatgatg taaaacaatt
1621 aacagaggta gtgcaaaaag tgggtataga aagcatagta atatggggaa agacccctaa
1681 atttagacta cccatacaaa gagacacatg ggaagcatgg tggatggagt attggcaggc
1741 tacctggatt cctgagtggg agtttgtcaa tacccctcct ctagtaaaat tatggtacca
1801 gttagaaaaa gaccccatag taggagcaga aa
//
last modified: Tue May 31 10:56 2022