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LOCUS AJ313398 1823 bp RNA linear VRL 15-APR-2005
DEFINITION Human immunodeficiency virus type 1 partial pol gene, genomic RNA,
isolate 00GAB-LBV18-08
ACCESSION AJ313398
VERSION AJ313398.1 GI:19069756
KEYWORDS pol gene; pol protein.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Vergne,L., Malonga-Mouellet,G., Mistoul,I., Mavoungou,R.,
Mansaray,H., Peeters,M. and Delaporte,E.
TITLE Resistance to antiretroviral treatment in Gabon: need for
implementation of guidelines on antiretroviral therapy use and
HIV-1 drug resistance monitoring in developing countries
JOURNAL J. Acquir. Immune Defic. Syndr. 29 (2), 165-168 (2002)
PUBMED 11832686
REFERENCE 2 (bases 1 to 1823)
Show all sequences for reference 2
AUTHORS Vergne,L.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) Vergne L., Retrovirus, Ird, 911, avenue
Agropolis, 34032 Montpellier Cedex 1, FRANCE
FEATURES Location/Qualifiers
source 1..1823
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="00GAB-LBV18-08"
/db_xref="taxon:11676"
/country="Gabon"
gene <54..>1823
/gene="pol"
CDS <54..>1823
/gene="pol"
/function="protease and RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="CAC86091.1"
/db_xref="GI:19069757"
/db_xref="GOA:Q8Q894"
/db_xref="InterPro:IPR000477"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR001995"
/db_xref="InterPro:IPR009007"
/db_xref="InterPro:IPR010659"
/db_xref="InterPro:IPR010661"
/db_xref="UniProtKB/TrEMBL:Q8Q894"
/translation="FRENLAFQQREARQFSPEQTGANSPASRDDLWDGGRDDLPSEEG
AEGQGTAPSFSFPQITLWQRPLVTVKIGGQLREALLDTGADDTVLEDINLPGKWKPKM
IGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISSI
ETVPVTLKPGMDGPKVKQWPLSEEKIKALTEICKEMEEEGKISKIGPENPYNTPVFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
KSFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPEIV
IYQYMDDLYVGSDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPIQLPDKDSWTVNDIQKLIGKLNWASQIYSGIKVKQLCRLLRGTKALTDIVPL
TEEAELELAENREILKNPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGK
YAKKRSAHTNDVRQLAEAVQKVAQESIVIWGKTPKFRLPIQRETWEAWWMEYWQATWI
PEWEFVNTPPLVKLWYQLEKDPIV"
BASE COUNT 694 a 322 c 403 g 404 t
ORIGIN
1 tgtggaaagg aaggacacca aatgaaagac tgcactgaaa gacaggctaa ttttttaggg
61 aaaatttggc cttccagcaa agggaggcca ggcaattttc cccagagcag accggagcca
121 acagccccgc cagcagagat gatctttggg atgggggaag agatgacctc ccctccgaag
181 agggagcaga aggacaggga acagccccct ccttcagttt ccctcaaatc actctttggc
241 aacgacccct tgttacagta aaaataggag gacagctaag agaggctcta ttagatacag
301 gagcagatga tacagtatta gaagacataa atttgccagg aaaatggaaa ccaaaaatga
361 tagggggaat tggaggtttt atcaaagtaa gacagtatga tcagatactt atagaaattt
421 gtggaaaaaa ggctataggt acagtattag tagggcctac acctgtcaac ataattggaa
481 gaaatatgtt gacacagatt ggttgtactt taaattttcc aattagttct attgaaactg
541 taccagtaac actaaagcca ggaatggatg gcccaaaggt taagcaatgg ccattatcag
601 aagagaaaat aaaagcatta acagaaattt gtaaagagat ggaagaggaa ggaaaaattt
661 caaaaattgg gcctgaaaac ccatacaata ctccagtatt tgccataaag aaaaaggaca
721 gcactaaatg gaggaaatta gtagatttca gagagctcaa taaaagaact caggatttct
781 gggaagttca attaggaata ccacatccag cgggtttaaa aaagaaaaaa tcagtgacag
841 tgctagatgt gggggatgca tacttttcag ttcctttaga taaaagcttt agaaagtata
901 ctgcatttac catacctagt ataaataatg agacaccagg aatcaggtat caatacaatg
961 tgcttccaca gggatggaaa ggatcaccag caatattcca gagtagcatg acaaaaatct
1021 tagagccctt tagatcaaaa aatccagaaa tagttatcta tcaatacatg gatgacttgt
1081 atgtaggatc tgatttagaa ataggacagc atagaacaaa aatagaggag ttgagggctc
1141 atctattgag ctggggattt actacaccag acaagaagca tcagaaagaa cctccatttc
1201 tttggatggg atatgaactc catcctgaca aatggacagt ccagcctata cagctgccag
1261 acaaagacag ctggactgtc aatgatatac agaaattaat aggaaaatta aattgggcaa
1321 gtcagattta ctcagggatt aaagtaaagc aactgtgtag actcctcagg ggaaccaaag
1381 cactaacaga tatagtccca ctgactgaag aagcagaatt agaattggca gagaacaggg
1441 aaattctaaa aaaccctgtg catggagtat attatgaccc ctcaaaagac ttaatagcag
1501 aaatacagaa acaagggcaa gaccaatgga catatcaaat ttatcaagag ccatttaaaa
1561 atctaaaaac aggaaaatat gcaaaaaaga ggtctgctca caccaatgat gtaagacaat
1621 tagcagaagc agtgcaaaaa gtggcccaag aaagcatagt aatatgggga aagaccccta
1681 aatttagact acccatccaa cgagaaacat gggaagcatg gtggatggag tattggcagg
1741 ctacctggat tcctgaatgg gagtttgtca atacccctcc tctagtaaaa ctatggtacc
1801 agttagaaaa agatcccata gta
//
last modified: Tue May 31 10:56 2022