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LOCUS	    AJ313398		    1823 bp    RNA     linear	VRL 15-APR-2005
DEFINITION  Human immunodeficiency virus type 1 partial pol gene, genomic RNA,
	    isolate 00GAB-LBV18-08
ACCESSION   AJ313398
VERSION     AJ313398.1 GI:19069756
KEYWORDS    pol gene; pol protein.
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Vergne,L., Malonga-Mouellet,G., Mistoul,I., Mavoungou,R.,
	    Mansaray,H., Peeters,M. and Delaporte,E.
  TITLE     Resistance to antiretroviral treatment in Gabon: need for
	    implementation of guidelines on antiretroviral therapy use and
	    HIV-1 drug resistance monitoring in developing countries
  JOURNAL   J. Acquir. Immune Defic. Syndr. 29 (2), 165-168 (2002)
  PUBMED    11832686
REFERENCE   2 (bases 1 to 1823)
            Show all sequences for reference 2
  AUTHORS   Vergne,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2001) Vergne L., Retrovirus, Ird, 911, avenue
	    Agropolis, 34032 Montpellier Cedex 1, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1823
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="00GAB-LBV18-08"
		     /db_xref="taxon:11676"
		     /country="Gabon"
     gene	     <54..>1823
		     /gene="pol"
     CDS	     <54..>1823
		     /gene="pol"
		     /function="protease and RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="CAC86091.1"
		     /db_xref="GI:19069757"
		     /db_xref="GOA:Q8Q894"
		     /db_xref="InterPro:IPR000477"
		     /db_xref="InterPro:IPR001969"
		     /db_xref="InterPro:IPR001995"
		     /db_xref="InterPro:IPR009007"
		     /db_xref="InterPro:IPR010659"
		     /db_xref="InterPro:IPR010661"
		     /db_xref="UniProtKB/TrEMBL:Q8Q894"
		     /translation="FRENLAFQQREARQFSPEQTGANSPASRDDLWDGGRDDLPSEEG
		     AEGQGTAPSFSFPQITLWQRPLVTVKIGGQLREALLDTGADDTVLEDINLPGKWKPKM
		     IGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISSI
		     ETVPVTLKPGMDGPKVKQWPLSEEKIKALTEICKEMEEEGKISKIGPENPYNTPVFAI
		     KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
		     KSFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPEIV
		     IYQYMDDLYVGSDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPD
		     KWTVQPIQLPDKDSWTVNDIQKLIGKLNWASQIYSGIKVKQLCRLLRGTKALTDIVPL
		     TEEAELELAENREILKNPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGK
		     YAKKRSAHTNDVRQLAEAVQKVAQESIVIWGKTPKFRLPIQRETWEAWWMEYWQATWI
		     PEWEFVNTPPLVKLWYQLEKDPIV"
BASE COUNT	694 a	 322 c	  403 g    404 t
ORIGIN
       1 tgtggaaagg aaggacacca aatgaaagac tgcactgaaa gacaggctaa ttttttaggg 
      61 aaaatttggc cttccagcaa agggaggcca ggcaattttc cccagagcag accggagcca 
     121 acagccccgc cagcagagat gatctttggg atgggggaag agatgacctc ccctccgaag 
     181 agggagcaga aggacaggga acagccccct ccttcagttt ccctcaaatc actctttggc 
     241 aacgacccct tgttacagta aaaataggag gacagctaag agaggctcta ttagatacag 
     301 gagcagatga tacagtatta gaagacataa atttgccagg aaaatggaaa ccaaaaatga 
     361 tagggggaat tggaggtttt atcaaagtaa gacagtatga tcagatactt atagaaattt 
     421 gtggaaaaaa ggctataggt acagtattag tagggcctac acctgtcaac ataattggaa 
     481 gaaatatgtt gacacagatt ggttgtactt taaattttcc aattagttct attgaaactg 
     541 taccagtaac actaaagcca ggaatggatg gcccaaaggt taagcaatgg ccattatcag 
     601 aagagaaaat aaaagcatta acagaaattt gtaaagagat ggaagaggaa ggaaaaattt 
     661 caaaaattgg gcctgaaaac ccatacaata ctccagtatt tgccataaag aaaaaggaca 
     721 gcactaaatg gaggaaatta gtagatttca gagagctcaa taaaagaact caggatttct 
     781 gggaagttca attaggaata ccacatccag cgggtttaaa aaagaaaaaa tcagtgacag 
     841 tgctagatgt gggggatgca tacttttcag ttcctttaga taaaagcttt agaaagtata 
     901 ctgcatttac catacctagt ataaataatg agacaccagg aatcaggtat caatacaatg 
     961 tgcttccaca gggatggaaa ggatcaccag caatattcca gagtagcatg acaaaaatct 
    1021 tagagccctt tagatcaaaa aatccagaaa tagttatcta tcaatacatg gatgacttgt 
    1081 atgtaggatc tgatttagaa ataggacagc atagaacaaa aatagaggag ttgagggctc 
    1141 atctattgag ctggggattt actacaccag acaagaagca tcagaaagaa cctccatttc 
    1201 tttggatggg atatgaactc catcctgaca aatggacagt ccagcctata cagctgccag 
    1261 acaaagacag ctggactgtc aatgatatac agaaattaat aggaaaatta aattgggcaa 
    1321 gtcagattta ctcagggatt aaagtaaagc aactgtgtag actcctcagg ggaaccaaag 
    1381 cactaacaga tatagtccca ctgactgaag aagcagaatt agaattggca gagaacaggg 
    1441 aaattctaaa aaaccctgtg catggagtat attatgaccc ctcaaaagac ttaatagcag 
    1501 aaatacagaa acaagggcaa gaccaatgga catatcaaat ttatcaagag ccatttaaaa 
    1561 atctaaaaac aggaaaatat gcaaaaaaga ggtctgctca caccaatgat gtaagacaat 
    1621 tagcagaagc agtgcaaaaa gtggcccaag aaagcatagt aatatgggga aagaccccta 
    1681 aatttagact acccatccaa cgagaaacat gggaagcatg gtggatggag tattggcagg 
    1741 ctacctggat tcctgaatgg gagtttgtca atacccctcc tctagtaaaa ctatggtacc 
    1801 agttagaaaa agatcccata gta
//
last modified: Tue May 31 10:56 2022


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