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HIV Sequence Database



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LOCUS	    AJ313397		    1837 bp    RNA     linear	VRL 15-APR-2005
DEFINITION  Human immunodeficiency virus type 1 partial pol gene, genomic RNA,
	    isolate 00GAB-LBV15-01
ACCESSION   AJ313397
VERSION     AJ313397.1 GI:19069754
KEYWORDS    pol gene; pol protein.
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Vergne,L., Malonga-Mouellet,G., Mistoul,I., Mavoungou,R.,
	    Mansaray,H., Peeters,M. and Delaporte,E.
  TITLE     Resistance to antiretroviral treatment in Gabon: need for
	    implementation of guidelines on antiretroviral therapy use and
	    HIV-1 drug resistance monitoring in developing countries
  JOURNAL   J. Acquir. Immune Defic. Syndr. 29 (2), 165-168 (2002)
  PUBMED    11832686
REFERENCE   2 (bases 1 to 1837)
            Show all sequences for reference 2
  AUTHORS   Vergne,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2001) Vergne L., Retrovirus, Ird, 911, avenue
	    Agropolis, 34032 Montpellier Cedex 1, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1837
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="00GAB-LBV15-01"
		     /db_xref="taxon:11676"
		     /country="Gabon"
     gene	     <54..>1837
		     /gene="pol"
     CDS	     <54..>1837
		     /gene="pol"
		     /function="protease and RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="CAC86174.1"
		     /db_xref="GI:19069755"
		     /db_xref="GOA:Q8Q895"
		     /db_xref="HSSP:P04584"
		     /db_xref="InterPro:IPR000477"
		     /db_xref="InterPro:IPR001969"
		     /db_xref="InterPro:IPR001995"
		     /db_xref="InterPro:IPR008916"
		     /db_xref="InterPro:IPR009007"
		     /db_xref="InterPro:IPR010659"
		     /db_xref="InterPro:IPR010661"
		     /db_xref="UniProtKB/TrEMBL:Q8Q895"
		     /translation="FRENLAFQQGEARKFSSEQTRANSPTSRELGDGGRDNLLSEAGT
		     EGQGTISSFNFPQITLWQRPLVTVKVGGQLIEALLDTGADDTVLEEINLPGKWKPKMI
		     GGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIE
		     TVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIK
		     KKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDK
		     NFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPEMVI
		     YQYMDDLYVGSDLEIGQHRAKIEELRKHLLTWGFTTPDKKHQKEPPFLWMGYELHPDK
		     WTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLT
		     EEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKY
		     AKRRSAHTNDVKQLTEVVQKAAMESIVIWGKTPKFRLPIQKETWEAWWMEYWQATWIP
		     EWEFVNTPPLVKLWYQLEKDPIAGAETC"
BASE COUNT	719 a	 313 c	  400 g    405 t
ORIGIN
       1 tgtggaaagg aaggacacca aatgaaagat tgtaccgaga ggcaggctaa ttttttaggg 
      61 aaaatttggc cttccaacaa ggggaggcca ggaaattttc ctcagagcag accagagcca 
     121 acagccccac cagcagagag cttggggatg ggggaagaga taacctcctc tccgaagcag 
     181 gaaccgaggg acaaggaact atatcctcct ttaacttccc tcaaatcact ctttggcaac 
     241 gacccttagt cacagtaaaa gtagggggac agctaataga agccctatta gacacaggag 
     301 cagatgatac agtattagaa gaaataaatt taccaggaaa atggaaacca aaaatgatag 
     361 ggggaattgg aggttttatc aaagtaagac aatatgatca gatacctata gaaatttgtg 
     421 gaaaaaaggc tataggtaca gtattggtag gacctacacc tgtcaacata attggacgga 
     481 atatgttgac tcagattggt tgtactttaa attttccaat tagtcctatt gaaactgtgc 
     541 cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca ttgacagaag 
     601 aaaaaataaa agcattaaca gaaatttgta cagagatgga aaaagaagga aaaatttcaa 
     661 aaattgggcc tgaaaatcca tacaatactc cagtatttgc tataaagaaa aaagatagta 
     721 ctaaatggag aaaattagta gatttcagag aactcaataa aagaactcaa gacttttggg 
     781 aggtgcaatt aggaatacct catcccgcgg gattaaaaaa gaaaaaatca gtaacagtcc 
     841 tggatgtggg ggatgcatat ttttcagttc ccttagacaa aaactttaga aagtatactg 
     901 cattcactat acctagtgta aataatgaga caccagggat tagatatcag tacaatgtgc 
     961 ttccacaggg atggaaagga tcaccagcaa tatttcaggc aagcatgaca aaaatcttag 
    1021 agccctttag aacaaaaaat ccagagatgg taatctacca atatatggat gatttatatg 
    1081 taggatctga cttagagata gggcaacata gagcaaaaat agaggagttg agaaaacatc 
    1141 tactgacatg gggatttacc acaccagaca aaaaacatca gaaagaacct ccatttcttt 
    1201 ggatgggata tgaactccat cctgacaaat ggacagtcca gcctataaag ctgccagaaa 
    1261 aagacagctg gactgttaat gacatacaga aattagtggg aaagctaaat tgggcgagtc 
    1321 agatttatgc aggaattaaa gtaaagcaac tgtgtaaact cctcagggga gccaaagcac 
    1381 taacagatat agtaacactg actgaggaag cagaattaga attagcagaa aacagggaaa 
    1441 ttctaaaaga acctgtacat ggagtatatt atgacccaac aaaagactta gtagcagaaa 
    1501 tacagaagca agggcaagac caatggacat atcaaattta tcaagagcca tttaaaaatc 
    1561 taaaaacagg aaaatatgca aaaaggaggt ctgcccacac taatgatgta aaacaattaa 
    1621 cagaggtagt gcaaaaagcg gctatggaaa gcatagtaat atggggaaag acccctaaat 
    1681 ttagactacc catacaaaaa gaaacatggg aagcatggtg gatggaatat tggcaagcta 
    1741 cctggattcc tgaatgggag tttgtcaata cccctcctct agtaaaatta tggtaccaat 
    1801 tagagaaaga ccccatagca ggagcagaaa cttgctt
//
last modified: Tue May 31 10:56 2022


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