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LOCUS AJ313394 1800 bp RNA linear VRL 15-APR-2005
DEFINITION Human immunodeficiency virus type 1 partial pol gene, genomic RNA,
isolate 00GAB-LBV11-05
ACCESSION AJ313394
VERSION AJ313394.1 GI:19069748
KEYWORDS pol gene; pol protein.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Vergne,L., Malonga-Mouellet,G., Mistoul,I., Mavoungou,R.,
Mansaray,H., Peeters,M. and Delaporte,E.
TITLE Resistance to antiretroviral treatment in Gabon: need for
implementation of guidelines on antiretroviral therapy use and
HIV-1 drug resistance monitoring in developing countries
JOURNAL J. Acquir. Immune Defic. Syndr. 29 (2), 165-168 (2002)
PUBMED 11832686
REFERENCE 2 (bases 1 to 1800)
Show all sequences for reference 2
AUTHORS Vergne,L.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) Vergne L., Retrovirus, Ird, 911, avenue
Agropolis, 34032 Montpellier Cedex 1, FRANCE
REFERENCE 3
Show all sequences for reference 3
AUTHORS Vergne,L., Stuyver,L., Van Houtte,M., Butel,C., Delaporte,E. and
Peeters,M.
TITLE Natural polymorphism in protease and reverse transcriptase genes
and in vitro antiretroviral drug susceptibilities of non-B HIV-1
strains from treatment-naive patients
JOURNAL J. Clin. Virol. 36 (1), 43-49 (2006)
PUBMED 16563858
FEATURES Location/Qualifiers
source 1..1800
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="00GAB-LBV11-05"
/db_xref="taxon:11676"
/country="Gabon"
gene <54..>1800
/gene="pol"
CDS <54..>1800
/gene="pol"
/function="protease and RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="CAC86171.1"
/db_xref="GI:19069749"
/db_xref="GOA:Q8Q898"
/db_xref="HSSP:P04584"
/db_xref="InterPro:IPR000477"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR001995"
/db_xref="InterPro:IPR002110"
/db_xref="InterPro:IPR009007"
/db_xref="InterPro:IPR010659"
/db_xref="InterPro:IPR010661"
/db_xref="UniProtKB/TrEMBL:Q8Q898"
/translation="FRENLAFQQRKAREFSPEQARANSPTSRELRVRRGDSPLPAAGA
EGEGAISCSFPQITLWQRPIVTVKIAGQLREALLDTGADDTVLEEINLPGKWKPKMIG
GIGGFIKVRQYEEVIIEIEGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPVDT
VPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISKIGPENPYNTPVFAIKK
KDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDPS
FRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRAKNPEIVIY
QYMDDLYVGSDLEIGKHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKW
TVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIVPLTE
EAELELAENREILREPVHGVYYDPSKDLIAEVQKQGVDQWTYQIYQEPFKNLKTGKYA
KRRTAHTNDVRQLTEVVQKICLESIVIWGKIPKFRLPIQRETWETWWTEYWQATWIPE
WEFVNTPPLVKLWYQL"
BASE COUNT 680 a 314 c 417 g 389 t
ORIGIN
1 tgtggaaagg aaggacacca aatgaaaggc tgcaccgaga gacaggctaa ttttttaggg
61 aaaatttggc cttccagcaa aggaaggcca gggaattttc cccagagcag gccagagcca
121 acagccccac cagcagagag cttcgggttc ggagaggaga tagccccctc cccgcagcag
181 gagccgaagg agaaggagct atatcctgta gcttccctca aatcactctt tggcagcgac
241 ccattgtcac agtaaaaata gcagggcagc tgagggaagc tctattagat acaggagcag
301 atgatacagt attagaagaa ataaatttgc caggaaaatg gaaaccaaaa atgatagggg
361 gaattggagg ttttatcaaa gtaagacagt atgaggaagt aatcatagag attgaaggga
421 aaaaggctat aggtacagtg ttagtaggac ctacacctgt caacataatt ggaaggaaca
481 tgttgactca gattggctgt actttaaatt ttccaattag tcctgttgac actgtaccag
541 taaaattaaa gccaggaatg gatggcccaa aagttaaaca atggccatta acagaagaaa
601 aaatcaaagc attaacggaa atttgtacag acatggaaaa ggaaggaaaa atttcaaaga
661 ttgggcctga aaatccatat aacactccag tgtttgccat aaagaaaaaa gatagcacta
721 aatggagaaa attagttgat tttagagaac tcaataaaag aactcaagac ttctgggaag
781 ttcaattagg aataccacat ccagcagggt taaagaagaa aaaatcagta acagtactgg
841 acgtggggga tgcatatttt tcagtccccc tagatccaag cttcagaaag tatactgcat
901 tcactatacc tagtataaac aatgagacgc cagggataag atatcagtac aatgtgcttc
961 cacagggatg gaaaggatcg ccagcaatat ttcaggctag catgacaaaa atcttagagc
1021 cctttagagc aaaaaatcca gagatagtga tttaccaata tatggatgat ttatatgtag
1081 gatctgactt agagataggg aagcatagag caaaaataga ggagttgaga gaacatctat
1141 tgaaatgggg atttaccaca ccagacaaaa aacatcagaa ggaacctcca tttctttgga
1201 tgggatatga actccatcct gacaaatgga cagtccagcc tataaagctg ccagaaaagg
1261 acagctggac tgtcaatgat atacaaaagt tagtgggaaa actaaattgg gctagtcaga
1321 tttatccagg gattaaagta aagcaactat gtaaactcct tagggggact aaagcactta
1381 cagacatagt accactgact gaagaagcag aattggaatt ggcagagaac agggaaattc
1441 taagagagcc agtacatgga gtatattatg acccatcaaa agatttaata gcagaagtac
1501 agaaacaagg ggtagaccaa tggacatatc aaatatatca agagccattt aaaaatctga
1561 aaacagggaa gtatgcaaaa aggaggactg cccacactaa tgatgtaagg caattaacag
1621 aagtggtaca aaaaatatgc ctggaaagca tagtaatatg gggaaaaatt cctaaattta
1681 gactacccat acaaagggaa acatgggaga catggtggac agaatattgg caggccacct
1741 ggatccctga atgggagttt gtcaataccc cccctctagt aaaattatgg taccagttgg
//
last modified: Tue May 31 10:56 2022