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LOCUS	    AJ313394		    1800 bp    RNA     linear	VRL 15-APR-2005
DEFINITION  Human immunodeficiency virus type 1 partial pol gene, genomic RNA,
	    isolate 00GAB-LBV11-05
ACCESSION   AJ313394
VERSION     AJ313394.1 GI:19069748
KEYWORDS    pol gene; pol protein.
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Vergne,L., Malonga-Mouellet,G., Mistoul,I., Mavoungou,R.,
	    Mansaray,H., Peeters,M. and Delaporte,E.
  TITLE     Resistance to antiretroviral treatment in Gabon: need for
	    implementation of guidelines on antiretroviral therapy use and
	    HIV-1 drug resistance monitoring in developing countries
  JOURNAL   J. Acquir. Immune Defic. Syndr. 29 (2), 165-168 (2002)
  PUBMED    11832686
REFERENCE   2 (bases 1 to 1800)
            Show all sequences for reference 2
  AUTHORS   Vergne,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2001) Vergne L., Retrovirus, Ird, 911, avenue
	    Agropolis, 34032 Montpellier Cedex 1, FRANCE
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Vergne,L., Stuyver,L., Van Houtte,M., Butel,C., Delaporte,E. and
	    Peeters,M.
  TITLE     Natural polymorphism in protease and reverse transcriptase genes
	    and in vitro antiretroviral drug susceptibilities of non-B HIV-1
	    strains from treatment-naive patients
  JOURNAL   J. Clin. Virol. 36 (1), 43-49 (2006)
  PUBMED    16563858
FEATURES             Location/Qualifiers
     source	     1..1800
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="00GAB-LBV11-05"
		     /db_xref="taxon:11676"
		     /country="Gabon"
     gene	     <54..>1800
		     /gene="pol"
     CDS	     <54..>1800
		     /gene="pol"
		     /function="protease and RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="CAC86171.1"
		     /db_xref="GI:19069749"
		     /db_xref="GOA:Q8Q898"
		     /db_xref="HSSP:P04584"
		     /db_xref="InterPro:IPR000477"
		     /db_xref="InterPro:IPR001969"
		     /db_xref="InterPro:IPR001995"
		     /db_xref="InterPro:IPR002110"
		     /db_xref="InterPro:IPR009007"
		     /db_xref="InterPro:IPR010659"
		     /db_xref="InterPro:IPR010661"
		     /db_xref="UniProtKB/TrEMBL:Q8Q898"
		     /translation="FRENLAFQQRKAREFSPEQARANSPTSRELRVRRGDSPLPAAGA
		     EGEGAISCSFPQITLWQRPIVTVKIAGQLREALLDTGADDTVLEEINLPGKWKPKMIG
		     GIGGFIKVRQYEEVIIEIEGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPVDT
		     VPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISKIGPENPYNTPVFAIKK
		     KDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDPS
		     FRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRAKNPEIVIY
		     QYMDDLYVGSDLEIGKHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKW
		     TVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIVPLTE
		     EAELELAENREILREPVHGVYYDPSKDLIAEVQKQGVDQWTYQIYQEPFKNLKTGKYA
		     KRRTAHTNDVRQLTEVVQKICLESIVIWGKIPKFRLPIQRETWETWWTEYWQATWIPE
		     WEFVNTPPLVKLWYQL"
BASE COUNT	680 a	 314 c	  417 g    389 t
ORIGIN
       1 tgtggaaagg aaggacacca aatgaaaggc tgcaccgaga gacaggctaa ttttttaggg 
      61 aaaatttggc cttccagcaa aggaaggcca gggaattttc cccagagcag gccagagcca 
     121 acagccccac cagcagagag cttcgggttc ggagaggaga tagccccctc cccgcagcag 
     181 gagccgaagg agaaggagct atatcctgta gcttccctca aatcactctt tggcagcgac 
     241 ccattgtcac agtaaaaata gcagggcagc tgagggaagc tctattagat acaggagcag 
     301 atgatacagt attagaagaa ataaatttgc caggaaaatg gaaaccaaaa atgatagggg 
     361 gaattggagg ttttatcaaa gtaagacagt atgaggaagt aatcatagag attgaaggga 
     421 aaaaggctat aggtacagtg ttagtaggac ctacacctgt caacataatt ggaaggaaca 
     481 tgttgactca gattggctgt actttaaatt ttccaattag tcctgttgac actgtaccag 
     541 taaaattaaa gccaggaatg gatggcccaa aagttaaaca atggccatta acagaagaaa 
     601 aaatcaaagc attaacggaa atttgtacag acatggaaaa ggaaggaaaa atttcaaaga 
     661 ttgggcctga aaatccatat aacactccag tgtttgccat aaagaaaaaa gatagcacta 
     721 aatggagaaa attagttgat tttagagaac tcaataaaag aactcaagac ttctgggaag 
     781 ttcaattagg aataccacat ccagcagggt taaagaagaa aaaatcagta acagtactgg 
     841 acgtggggga tgcatatttt tcagtccccc tagatccaag cttcagaaag tatactgcat 
     901 tcactatacc tagtataaac aatgagacgc cagggataag atatcagtac aatgtgcttc 
     961 cacagggatg gaaaggatcg ccagcaatat ttcaggctag catgacaaaa atcttagagc 
    1021 cctttagagc aaaaaatcca gagatagtga tttaccaata tatggatgat ttatatgtag 
    1081 gatctgactt agagataggg aagcatagag caaaaataga ggagttgaga gaacatctat 
    1141 tgaaatgggg atttaccaca ccagacaaaa aacatcagaa ggaacctcca tttctttgga 
    1201 tgggatatga actccatcct gacaaatgga cagtccagcc tataaagctg ccagaaaagg 
    1261 acagctggac tgtcaatgat atacaaaagt tagtgggaaa actaaattgg gctagtcaga 
    1321 tttatccagg gattaaagta aagcaactat gtaaactcct tagggggact aaagcactta 
    1381 cagacatagt accactgact gaagaagcag aattggaatt ggcagagaac agggaaattc 
    1441 taagagagcc agtacatgga gtatattatg acccatcaaa agatttaata gcagaagtac 
    1501 agaaacaagg ggtagaccaa tggacatatc aaatatatca agagccattt aaaaatctga 
    1561 aaacagggaa gtatgcaaaa aggaggactg cccacactaa tgatgtaagg caattaacag 
    1621 aagtggtaca aaaaatatgc ctggaaagca tagtaatatg gggaaaaatt cctaaattta 
    1681 gactacccat acaaagggaa acatgggaga catggtggac agaatattgg caggccacct 
    1741 ggatccctga atgggagttt gtcaataccc cccctctagt aaaattatgg taccagttgg 
//
last modified: Tue May 31 10:56 2022


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