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LOCUS	    AJ286136		    2136 bp    DNA     linear	VRL 15-APR-2005
DEFINITION  Human immunodeficiency virus type 1 proviral partial pol gene,
	    isolate 97SN.16HALD
ACCESSION   AJ286136
VERSION     AJ286136.1 GI:7649463
KEYWORDS    pol gene; pol protein.
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Montavon,C., Toure-Kane,C., Liegeois,F., Mpoudi,E., Bourgeois,A.,
	    Vergne,L., Perret,J.L., Boumah,A., Saman,E., Mboup,S., Delaporte,E.
	    and Peeters,M.
  TITLE     Most env and gag subtype A HIV-1 viruses circulating in West and
	    West Central Africa are similar to the prototype AG recombinant
	    virus IBNG
  JOURNAL   J. Acquir. Immune Defic. Syndr. 23 (5), 363-374 (2000)
  PUBMED    10866228
REFERENCE   2 (bases 1 to 2136)
            Show all sequences for reference 2
  AUTHORS   Montavon,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2000) Montavon C., Laboratoire Retrovirus, IRD,
	    911 avenue Agropolis, BP5045, 34 32 Montpellier, FRANCE
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Diop-Ndiaye,H., Toure-Kane,C., Leye,N., Ngom-Gueye,N.F.,
	    Montavon,C., Peeters,M. and Mboup,S.
  TITLE     Antiretroviral drug resistance mutations in antiretroviral-naive
	    patients from Senegal.
  JOURNAL   AIDS Res. Hum. Retroviruses. 26(10); 1133-8 (2010)
  PUBMED    20849302
FEATURES             Location/Qualifiers
     source	     1..2136
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="97SN.16HALD"
		     /db_xref="taxon:11676"
		     /country="Senegal"
		     /note="subtype A/G Ibng"
     gene	     <53..>2136
		     /gene="pol"
     CDS	     <53..>2136
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="CAB89105.1"
		     /db_xref="GI:7649464"
		     /db_xref="GOA:Q9IV08"
		     /db_xref="HSSP:P04585"
		     /db_xref="InterPro:IPR000477"
		     /db_xref="InterPro:IPR001969"
		     /db_xref="InterPro:IPR001995"
		     /db_xref="InterPro:IPR002156"
		     /db_xref="InterPro:IPR009007"
		     /db_xref="InterPro:IPR010659"
		     /db_xref="InterPro:IPR010661"
		     /db_xref="InterPro:IPR012337"
		     /db_xref="UniProtKB/TrEMBL:Q9IV08"
		     /translation="FFRENLAFQQREARKFSSGQTGAISPTSRELWDEGGDNLLSEAG
		     AGEPSFNFPQITLWQRPIVTVKIGGQLKEALLDTGADDTVLEEINLPGKWRPKMIGGI
		     GGFIKVRQYDQILIEICGQKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIETVP
		     VKLKPGMDGPKIKQWPLTEEKIKALTEICAEMEKEGKISKIGPENPYNTPVFAIKKKD
		     STKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFR
		     KYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPEMVIYQY
		     MDDLYVGSDLEIGQPRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTV
		     QPIKLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVTLTEEA
		     ELELAENREILKEPVHGVYYDPTKDLTAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKK
		     RSAHTNDVKQLTEVVQKVATESIIIWGKTPKFKLPIQKETWDVWWAEYWQATWIPEWE
		     FVNTPPLVKLWYQLEKDPIVGAATFYVDGAANRETKVGKAGYVTDKGIQKVITLTEPA
		     NQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAHPDRSESELVNQIIKKLIEKEKV
		     YMSWVPAHKGIGG"
BASE COUNT	832 a	 369 c	  468 g    467 t
ORIGIN
       1 tttgtggaaa ggaaggacac caaatgaaag actgcactga gagacaggct aattttttag 
      61 ggaaaatttg gccttccaac aaagggaggc caggaaattt tcctcagggc agactggagc 
     121 catcagcccc accagcagag aactatggga tgaaggaggg gacaacctcc tctctgaagc 
     181 aggagcagga gaaccctcct ttaatttccc tcaaatcact ctttggcaac gacccattgt 
     241 cacagtaaaa ataggaggac agctaaagga agctctgtta gacacaggag cagatgatac 
     301 agtattagaa gaaataaatc tgccaggaaa atggagacca aaaatgatag ggggaattgg 
     361 aggttttatc aaagtgagac agtatgatca gatacttata gaaatttgtg gacaaaaggc 
     421 tataggtaca gtattagtag gacctacacc tgtcaacata attggacgga acatgttgac 
     481 tcaaattggt tgtactttaa attttccaat tagtcctatt gaaactgtgc cagtaaaatt 
     541 aaagccagga atggatggcc caaagattaa acaatggcca ttgacagaag aaaaaataaa 
     601 agcattaaca gaaatttgtg cagagatgga aaaggaagga aaaatttcaa aaattgggcc 
     661 tgaaaatcca tataatactc cagtatttgc tataaagaaa aaggacagca ctaaatggag 
     721 gaaattagta gatttcagag aactcaataa gagaactcaa gacttctggg aggtccaatt 
     781 aggaatacct catcccgcgg gattaaaaaa gaaaaaatca gtaacagtat tagatgtggg 
     841 ggatgcatat ttttcagttc ctttagataa agacttcagg aagtatactg cattcactat 
     901 acctagtgta aataatgaga caccagggat tagatatcag tacaatgtgc ttccacaggg 
     961 atggaaagga tcaccagcca tatttcaggc aagcatgaca aaaatcttag agccctttag 
    1021 aacaaaaaat ccagagatgg ttatctacca atatatggat gatttatatg taggatctga 
    1081 cttagagata gggcagccta gaacaaaaat agaggaattg agagagcatc tgctgagatg 
    1141 gggatttacc acaccagaca aaaaacatca gaaagaacct ccatttcttt ggatgggata 
    1201 tgaactccat cctgacaaat ggacagtcca gcctataaag ctgccagaca aagacagctg 
    1261 gactgtcaat gatatacaga aattagtggg aaaactaaat tgggcaagtc agatctatcc 
    1321 aggaattaaa gtaaagcaac tatgtaaact cctcagggga gccaaagcac taacagatat 
    1381 agtaacactg actgaggaag cagaattaga attagcagag aacagggaaa ttctaaaaga 
    1441 acctgtacat ggagtatatt atgacccaac aaaagactta acagcagaaa tacagaaaca 
    1501 agggcaagac caatggacat atcaaattta tcaagagcca tttaaaaacc taaaaacagg 
    1561 aaaatatgca aaaaagaggt ctgcccacac aaatgatgta aaacaattaa cagaggtagt 
    1621 gcaaaaagtg gctacagaaa gcataataat atggggaaag acccctaaat ttaaattgcc 
    1681 catacaaaag gaaacatggg atgtatggtg ggcagagtat tggcaggcta cctggattcc 
    1741 tgaatgggag tttgtcaata cccctcctct agtaaaatta tggtaccagt tagaaaaaga 
    1801 ccccatagta ggagcagcaa ctttctatgt agatggggca gctaataggg agactaaggt 
    1861 aggaaaagca gggtatgtca ctgacaaagg aatacaaaaa gttattaccc taactgaacc 
    1921 agcaaatcaa aagactgaat tacatgcaat tcatttagcc ttacaggatt caggatcaga 
    1981 agtaaatata gtaacagact cacagtatgc cttaggaatc atccaggcac acccagacag 
    2041 gagtgaatca gaattagtca atcaaataat aaagaaacta atagaaaagg aaaaagtcta 
    2101 catgtcatgg gtaccagccc acaaagggat tggggg
//
last modified: Tue May 31 10:56 2022


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