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LOCUS AJ286136 2136 bp DNA linear VRL 15-APR-2005
DEFINITION Human immunodeficiency virus type 1 proviral partial pol gene,
isolate 97SN.16HALD
ACCESSION AJ286136
VERSION AJ286136.1 GI:7649463
KEYWORDS pol gene; pol protein.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Montavon,C., Toure-Kane,C., Liegeois,F., Mpoudi,E., Bourgeois,A.,
Vergne,L., Perret,J.L., Boumah,A., Saman,E., Mboup,S., Delaporte,E.
and Peeters,M.
TITLE Most env and gag subtype A HIV-1 viruses circulating in West and
West Central Africa are similar to the prototype AG recombinant
virus IBNG
JOURNAL J. Acquir. Immune Defic. Syndr. 23 (5), 363-374 (2000)
PUBMED 10866228
REFERENCE 2 (bases 1 to 2136)
Show all sequences for reference 2
AUTHORS Montavon,C.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2000) Montavon C., Laboratoire Retrovirus, IRD,
911 avenue Agropolis, BP5045, 34 32 Montpellier, FRANCE
REFERENCE 3
Show all sequences for reference 3
AUTHORS Diop-Ndiaye,H., Toure-Kane,C., Leye,N., Ngom-Gueye,N.F.,
Montavon,C., Peeters,M. and Mboup,S.
TITLE Antiretroviral drug resistance mutations in antiretroviral-naive
patients from Senegal.
JOURNAL AIDS Res. Hum. Retroviruses. 26(10); 1133-8 (2010)
PUBMED 20849302
FEATURES Location/Qualifiers
source 1..2136
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="97SN.16HALD"
/db_xref="taxon:11676"
/country="Senegal"
/note="subtype A/G Ibng"
gene <53..>2136
/gene="pol"
CDS <53..>2136
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="CAB89105.1"
/db_xref="GI:7649464"
/db_xref="GOA:Q9IV08"
/db_xref="HSSP:P04585"
/db_xref="InterPro:IPR000477"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR001995"
/db_xref="InterPro:IPR002156"
/db_xref="InterPro:IPR009007"
/db_xref="InterPro:IPR010659"
/db_xref="InterPro:IPR010661"
/db_xref="InterPro:IPR012337"
/db_xref="UniProtKB/TrEMBL:Q9IV08"
/translation="FFRENLAFQQREARKFSSGQTGAISPTSRELWDEGGDNLLSEAG
AGEPSFNFPQITLWQRPIVTVKIGGQLKEALLDTGADDTVLEEINLPGKWRPKMIGGI
GGFIKVRQYDQILIEICGQKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIETVP
VKLKPGMDGPKIKQWPLTEEKIKALTEICAEMEKEGKISKIGPENPYNTPVFAIKKKD
STKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFR
KYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPEMVIYQY
MDDLYVGSDLEIGQPRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTV
QPIKLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVTLTEEA
ELELAENREILKEPVHGVYYDPTKDLTAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKK
RSAHTNDVKQLTEVVQKVATESIIIWGKTPKFKLPIQKETWDVWWAEYWQATWIPEWE
FVNTPPLVKLWYQLEKDPIVGAATFYVDGAANRETKVGKAGYVTDKGIQKVITLTEPA
NQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAHPDRSESELVNQIIKKLIEKEKV
YMSWVPAHKGIGG"
BASE COUNT 832 a 369 c 468 g 467 t
ORIGIN
1 tttgtggaaa ggaaggacac caaatgaaag actgcactga gagacaggct aattttttag
61 ggaaaatttg gccttccaac aaagggaggc caggaaattt tcctcagggc agactggagc
121 catcagcccc accagcagag aactatggga tgaaggaggg gacaacctcc tctctgaagc
181 aggagcagga gaaccctcct ttaatttccc tcaaatcact ctttggcaac gacccattgt
241 cacagtaaaa ataggaggac agctaaagga agctctgtta gacacaggag cagatgatac
301 agtattagaa gaaataaatc tgccaggaaa atggagacca aaaatgatag ggggaattgg
361 aggttttatc aaagtgagac agtatgatca gatacttata gaaatttgtg gacaaaaggc
421 tataggtaca gtattagtag gacctacacc tgtcaacata attggacgga acatgttgac
481 tcaaattggt tgtactttaa attttccaat tagtcctatt gaaactgtgc cagtaaaatt
541 aaagccagga atggatggcc caaagattaa acaatggcca ttgacagaag aaaaaataaa
601 agcattaaca gaaatttgtg cagagatgga aaaggaagga aaaatttcaa aaattgggcc
661 tgaaaatcca tataatactc cagtatttgc tataaagaaa aaggacagca ctaaatggag
721 gaaattagta gatttcagag aactcaataa gagaactcaa gacttctggg aggtccaatt
781 aggaatacct catcccgcgg gattaaaaaa gaaaaaatca gtaacagtat tagatgtggg
841 ggatgcatat ttttcagttc ctttagataa agacttcagg aagtatactg cattcactat
901 acctagtgta aataatgaga caccagggat tagatatcag tacaatgtgc ttccacaggg
961 atggaaagga tcaccagcca tatttcaggc aagcatgaca aaaatcttag agccctttag
1021 aacaaaaaat ccagagatgg ttatctacca atatatggat gatttatatg taggatctga
1081 cttagagata gggcagccta gaacaaaaat agaggaattg agagagcatc tgctgagatg
1141 gggatttacc acaccagaca aaaaacatca gaaagaacct ccatttcttt ggatgggata
1201 tgaactccat cctgacaaat ggacagtcca gcctataaag ctgccagaca aagacagctg
1261 gactgtcaat gatatacaga aattagtggg aaaactaaat tgggcaagtc agatctatcc
1321 aggaattaaa gtaaagcaac tatgtaaact cctcagggga gccaaagcac taacagatat
1381 agtaacactg actgaggaag cagaattaga attagcagag aacagggaaa ttctaaaaga
1441 acctgtacat ggagtatatt atgacccaac aaaagactta acagcagaaa tacagaaaca
1501 agggcaagac caatggacat atcaaattta tcaagagcca tttaaaaacc taaaaacagg
1561 aaaatatgca aaaaagaggt ctgcccacac aaatgatgta aaacaattaa cagaggtagt
1621 gcaaaaagtg gctacagaaa gcataataat atggggaaag acccctaaat ttaaattgcc
1681 catacaaaag gaaacatggg atgtatggtg ggcagagtat tggcaggcta cctggattcc
1741 tgaatgggag tttgtcaata cccctcctct agtaaaatta tggtaccagt tagaaaaaga
1801 ccccatagta ggagcagcaa ctttctatgt agatggggca gctaataggg agactaaggt
1861 aggaaaagca gggtatgtca ctgacaaagg aatacaaaaa gttattaccc taactgaacc
1921 agcaaatcaa aagactgaat tacatgcaat tcatttagcc ttacaggatt caggatcaga
1981 agtaaatata gtaacagact cacagtatgc cttaggaatc atccaggcac acccagacag
2041 gagtgaatca gaattagtca atcaaataat aaagaaacta atagaaaagg aaaaagtcta
2101 catgtcatgg gtaccagccc acaaagggat tggggg
//
last modified: Tue May 31 10:56 2022