HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF509316		     612 bp    RNA     linear	VRL 10-JUL-2002
DEFINITION  HIV-1 isolate 054_1607 from France reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   AF509316
VERSION     AF509316.1 GI:21218327
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 612)
            Show all sequences for reference 1
  AUTHORS   Cunningham,C.K., Chaix,M.-L., Rekacewicz,C., Britto,P.,
	    Rouzioux,C., Gelber,R.D., Dorenbaum,A., Delfraissy,J.F., Bazin,B.,
	    Mofenson,L. and Sullivan,J.L.
  TITLE     Development of resistance mutations in women receiving standard
	    antiretroviral therapy who received intrapartum nevirapine to
	    prevent perinatal human immunodeficiency virus type 1 transmission:
	    a substudy of pediatric AIDS clinical trials group protocol 316.
  JOURNAL   J. Infect. Dis.. 186(2); 181-8 (2002)
  PUBMED    12134253
REFERENCE   2 (bases 1 to 612)
            Show all sequences for reference 2
  AUTHORS   Chaix,M.-L. and Rouzioux,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2002) Virology, Hospital Necker-Enfants Malades,
	    149 rue de Sevres, Paris 75015, France
FEATURES             Location/Qualifiers
     source	     1..612
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="054_1607"
		     /db_xref="taxon:11676"
		     /country="France"
     gene	     <1..>612
		     /gene="pol"
     CDS	     <1..>612
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AAM44034.1"
		     /db_xref="GI:21218328"
		     /translation="MEKEGKISRIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRT
		     QDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGI
		     RYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDMVIYQYVDDLYVGSDLEIGQHRT
		     KIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPI"
BASE COUNT	238 a	 102 c	  125 g    147 t
ORIGIN
       1 atggaaaagg aaggtaaaat ttcaagaatt gggcctgaaa atccatataa tactccagta 
      61 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagattt cagagaactt 
     121 aataagagaa ctcaagactt ctgggaagtt caattgggaa taccacatcc cgcagggtta 
     181 aaaaagaaaa aatcagtaac agtactggat gtgggtgatg catatttttc agttccctta 
     241 gataaagact tcaggaagta tactgcattt accataccta gtataaacaa tgagacacca 
     301 ggaattagat atcagtacaa tgtgctgcca cagggatgga aaggatcacc agcaatattt 
     361 caaagtagca tgacaagaat cttagagcct tttagaaaac aaaatccaga catggttatc 
     421 tatcaatacg tggatgatct gtatgtaggc tctgatttag aaatagggca gcatagaaca 
     481 aaaatagagg aactgagaga acatctgttg aagtggggat ttaccacacc agacaaaaaa 
     541 catcagaaag aacccccatt cctttggatg ggttatgaac tccatcctga taaatggaca 
     601 gtacagccta ta
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.