HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF478017		     129 bp    RNA     linear	VRL 09-AUG-2002
DEFINITION  HIV-1 isolate K-2 from USA protease (pol) gene, partial cds
ACCESSION   AF478017
VERSION     AF478017.1 GI:19172327
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 129)
            Show all sequences for reference 1
  AUTHORS   Brachtel,E.F., Mascola,J.R., Wear,D.J., Ehrenberg,P.K.,
	    Dayhoff,D.E., Sanders-Buell,E., Michael,N.L. and Frankel,S.S.
  TITLE     Demonstration of de Novo HIV Type 1 Production by Detection of
	    Multiply Spliced and Unspliced HIV Type 1 RNA in Paraffin-Embedded
	    Tonsils
  JOURNAL   AIDS Res. Hum. Retroviruses 18 (11), 785-790 (2002)
  PUBMED    12167270
REFERENCE   2 (bases 1 to 129)
            Show all sequences for reference 2
  AUTHORS   Brachtel,E.F., Mascola,J.R., Wear,D.J., Ehrenberg,P.K.,
	    Dayhoff,D.E., Sanders-Buell,E., Michael,N.L. and Frankel,S.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2002) Division of Retrovirology, Walter Reed Army
	    Institute of Research, 1600 E. Gude Drive, Rockville, MD 20850, USA
FEATURES             Location/Qualifiers
     source	     1..129
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="K-2"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="isolated from tonsillar tissue"
     gene	     <1..>129
		     /gene="pol"
     CDS	     <1..>129
		     /gene="pol"
		     /codon_start="2"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAL85856.1"
		     /db_xref="GI:19172328"
		     /translation="TVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIG"
BASE COUNT	 54 a	  13 c	   31 g     31 t
ORIGIN
       1 tacagtatta gaagaaatga atttgccagg aaaatggaaa ccaaaaatga tagggggaat 
      61 tggaggtttt atcaaagtaa gacagtatga tcagatactc atagaaatct gtggacataa 
     121 agctatagg
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.