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LOCUS AF459171 965 bp RNA linear VRL 24-JUL-2002
DEFINITION HIV-1 isolate patient AD-80 from USA pol protein (pol) gene,
partial cds
ACCESSION AF459171
VERSION AF459171.1 GI:21952142
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 965)
Show all sequences for reference 1
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Evolving patterns of HIV-1 resistance to antiretroviral agents in
newly infected individuals
JOURNAL AIDS 16 (11), 1511-1519 (2002)
PUBMED 12131189
REFERENCE 2 (bases 1 to 965)
Show all sequences for reference 2
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
Rockefeller University, 455 First Avenue, New York City, NY 10016,
USA
COMMENT Clinical history consistent with acute retroviral syndrome within
90 days of presentation. Negative HIV-1 serology documented within
120 days of screening.
FEATURES Location/Qualifiers
source 1..965
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient AD-80"
/db_xref="taxon:11676"
/country="USA"
gene <1..>965
/gene="pol"
CDS <1..>965
/gene="pol"
/note="contains protease and reverse transcriptase;
sequence generated using in-house assay"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAM82494.1"
/db_xref="GI:21952143"
/translation="PQITLWQRPIVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALLEICTEMEKEGKISKIGPENAYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
LDKEFRKYTAFTIPCTNNERPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDQKHQ"
BASE COUNT 387 a 151 c 198 g 229 t
ORIGIN
1 cctcagatca ctctttggca acggcccatc gtcacaataa aggtaggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatagcca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattac tagaaatctg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatg catataatac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcaat tccattagat
661 aaagaattta ggaagtatac tgcatttacc ataccttgta caaacaatga gagaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agcagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gatttagaaa taggacagca tagaacaaaa
901 atagaggagt tgaggcaaca tctgttgaag tggggattaa ccacaccaga ccaaaaacat
961 cagaa
//
last modified: Tue May 31 10:56 2022