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LOCUS	    AF459171		     965 bp    RNA     linear	VRL 24-JUL-2002
DEFINITION  HIV-1 isolate patient AD-80 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   AF459171
VERSION     AF459171.1 GI:21952142
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 965)
            Show all sequences for reference 1
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Evolving patterns of HIV-1 resistance to antiretroviral agents in
	    newly infected individuals
  JOURNAL   AIDS 16 (11), 1511-1519 (2002)
  PUBMED    12131189
REFERENCE   2 (bases 1 to 965)
            Show all sequences for reference 2
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
	    Rockefeller University, 455 First Avenue, New York City, NY 10016,
	    USA
COMMENT     Clinical history consistent with acute retroviral syndrome within
	    90 days of presentation. Negative HIV-1 serology documented within
	    120 days of screening.
FEATURES             Location/Qualifiers
     source	     1..965
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient AD-80"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>965
		     /gene="pol"
     CDS	     <1..>965
		     /gene="pol"
		     /note="contains protease and reverse transcriptase;
		     sequence generated using in-house assay"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAM82494.1"
		     /db_xref="GI:21952143"
		     /translation="PQITLWQRPIVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALLEICTEMEKEGKISKIGPENAYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
		     LDKEFRKYTAFTIPCTNNERPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDQKHQ"
BASE COUNT	387 a	 151 c	  198 g    229 t
ORIGIN
       1 cctcagatca ctctttggca acggcccatc gtcacaataa aggtaggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatagcca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattac tagaaatctg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatg catataatac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcaat tccattagat 
     661 aaagaattta ggaagtatac tgcatttacc ataccttgta caaacaatga gagaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agcagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gatttagaaa taggacagca tagaacaaaa 
     901 atagaggagt tgaggcaaca tctgttgaag tggggattaa ccacaccaga ccaaaaacat 
     961 cagaa
//
last modified: Tue May 31 10:56 2022


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