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LOCUS AF459109 965 bp RNA linear VRL 24-JUL-2002
DEFINITION HIV-1 isolate patient AD-9 from USA pol protein (pol) gene, partial
cds
ACCESSION AF459109
VERSION AF459109.1 GI:21952018
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 965)
Show all sequences for reference 1
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Evolving patterns of HIV-1 resistance to antiretroviral agents in
newly infected individuals
JOURNAL AIDS 16 (11), 1511-1519 (2002)
PUBMED 12131189
REFERENCE 2 (bases 1 to 965)
Show all sequences for reference 2
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
Rockefeller University, 455 First Avenue, New York City, NY 10016,
USA
COMMENT Clinical history consistent with acute retroviral syndrome within
90 days of presentation. Negative HIV-1 serology documented within
120 days of screening.
FEATURES Location/Qualifiers
source 1..965
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient AD-9"
/db_xref="taxon:11676"
/country="USA"
gene <1..>965
/gene="pol"
CDS <1..>965
/gene="pol"
/note="contains protease and reverse transcriptase;
sequence generated using in-house assay"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAM82432.1"
/db_xref="GI:21952019"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPII
PIETVPLKLNPGMDGPKFKQWPLTKKKIKALIEICTEMEKEGKISKIGPENPYNTPLF
AIKKKDSTKWKKLLYFRKLNKRTQNFWEVQLGIPPPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPPIFQSSMTKILKPFKKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEDLRPHLLRWGFTTPDKKHQ"
BASE COUNT 391 a 158 c 182 g 234 t
ORIGIN
1 cctcaaatca ctctttggca acgaccactc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtgttag aagaaatgaa tttgccaggg
121 agatggaaac caaaaatgat agggggaatt ggaggtttta taaaagtaag acagtatgat
181 caaatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc
301 attattccta ttgaaactgt accattaaaa ttaaacccag gaatggatgg gccaaaattt
361 aaacaatggc cattgacaaa aaaaaaaata aaagcattaa tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac cccattattt
481 gccataaaaa aaaaagacag tactaaatgg aaaaaattat tatatttcag aaaacttaat
541 aagagaactc aaaacttctg ggaagttcaa ttaggaatac cacctcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccacc aatattccaa
781 agtagcatga caaaaatctt aaagcctttt aaaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggacc tgagaccaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaa
//
last modified: Tue May 31 10:56 2022