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LOCUS	    AF459109		     965 bp    RNA     linear	VRL 24-JUL-2002
DEFINITION  HIV-1 isolate patient AD-9 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   AF459109
VERSION     AF459109.1 GI:21952018
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 965)
            Show all sequences for reference 1
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Evolving patterns of HIV-1 resistance to antiretroviral agents in
	    newly infected individuals
  JOURNAL   AIDS 16 (11), 1511-1519 (2002)
  PUBMED    12131189
REFERENCE   2 (bases 1 to 965)
            Show all sequences for reference 2
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
	    Rockefeller University, 455 First Avenue, New York City, NY 10016,
	    USA
COMMENT     Clinical history consistent with acute retroviral syndrome within
	    90 days of presentation. Negative HIV-1 serology documented within
	    120 days of screening.
FEATURES             Location/Qualifiers
     source	     1..965
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient AD-9"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>965
		     /gene="pol"
     CDS	     <1..>965
		     /gene="pol"
		     /note="contains protease and reverse transcriptase;
		     sequence generated using in-house assay"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAM82432.1"
		     /db_xref="GI:21952019"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPII
		     PIETVPLKLNPGMDGPKFKQWPLTKKKIKALIEICTEMEKEGKISKIGPENPYNTPLF
		     AIKKKDSTKWKKLLYFRKLNKRTQNFWEVQLGIPPPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPPIFQSSMTKILKPFKKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEDLRPHLLRWGFTTPDKKHQ"
BASE COUNT	391 a	 158 c	  182 g    234 t
ORIGIN
       1 cctcaaatca ctctttggca acgaccactc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtgttag aagaaatgaa tttgccaggg 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta taaaagtaag acagtatgat 
     181 caaatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc 
     301 attattccta ttgaaactgt accattaaaa ttaaacccag gaatggatgg gccaaaattt 
     361 aaacaatggc cattgacaaa aaaaaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac cccattattt 
     481 gccataaaaa aaaaagacag tactaaatgg aaaaaattat tatatttcag aaaacttaat 
     541 aagagaactc aaaacttctg ggaagttcaa ttaggaatac cacctcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccacc aatattccaa 
     781 agtagcatga caaaaatctt aaagcctttt aaaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggacc tgagaccaca tctgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaa
//
last modified: Tue May 31 10:56 2022


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