HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF401048		    1484 bp    DNA     linear	VRL 12-AUG-2001
DEFINITION  HIV-1 isolate RB5-1 from USA nonfunctional envelope glycoprotein,
	    partial sequence
ACCESSION   AF401048
VERSION     AF401048.1 GI:15149387
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1484)
            Show all sequences for reference 1
  AUTHORS   Marras,D., Bruggeman,L. and Klotman,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2001) Department of Nephrology, Mount Sinai
	    School of Medicine, One Gustave L. Levy Place, New York, NY 10029,
	    USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Marras,D., Bruggeman,L.A., Gao,F., Tanji,N., Mansukhani,M.M.,
	    Cara,A., Ross,M.D., Gusella,G.L., Benson,G., D'Agati,V.D.,
	    Hahn,B.H., Klotman,M.E. and Klotman,P.E.
  TITLE     Replication and compartmentalization of HIV-1 in kidney epithelium
	    of patients with HIV-associated nephropathy
  JOURNAL   Nat. Med. 8 (5), 522-526 (2002)
  PUBMED    11984599
FEATURES             Location/Qualifiers
     source	     1..1484
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="RB5-1"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="derived from kidney tubular epithelial cell of
		     patient"
     misc_feature    1..>1484
		     /note="nonfunctional envelope glycoprotein due to
		     mutation; gp120"
BASE COUNT	558 a	 249 c	  307 g    370 t
ORIGIN
       1 atgagagtga aggagaaata tcagcacttg tggagagggg gcatcttgct ccttgggata 
      61 ttaatgatca gtagtgctgc agaacaatcg tgggtcacag tctattatgg ggtacctgtg 
     121 tggaaagaag ctactaccac tctattttgt gcatcagatg ctaaagcata tgaaacagag 
     181 gtacataatg tttgggccac acatgcctgt gtacccacag accccagccc acaagaacaa 
     241 agattgggaa atgtgacaga atattttaac atgtggaaaa ataacatggt agaacagatg 
     301 catgaggata taattagttt gtgggatcaa agcccaaagc catgtgtaaa attaacccca 
     361 ctctgtgtta ctctaaattg cactgatgtg acgaatacta ctactattaa tggtactgcc 
     421 actactaata tcactatcga ggaaaaaatg aagggagaag taaaaaactg ctctttcaat 
     481 atcaccacaa gcataagaga taagaaacag aaagaatatg cacctttttt ataaccttga 
     541 tgtagtacca ataaatgatg ataatactag ctataggttg ataagttgta acacctcagt 
     601 cattacacag gcctgtccaa aggtatcctt tgagccaatt cccgtacatt attgtgcccc 
     661 ggcaggtttt gcgattctaa aatgtaataa taagacattc aatggaaaag gactatgtac 
     721 aaatgttagc acagtacaat gtacacacgg aattaggcca gtggtatcaa ctcaactgct 
     781 attaaatggc agcctagcag aagaagagat agtaattaga tctgaaaatt tcacagacaa 
     841 tactaaaacc ataatagtac agctgaacaa atctgtagta attaattgta caagacccaa 
     901 caacaataca agaaaaagta tacatatagg accagggagc gcattttatg caacaggaga 
     961 gataatagga aatataagac aagcatattg caccgttaat ggaacagaat ggaataacac 
    1021 tctaaaacag atagttgaaa aattaagagg acaatttggg aataatacaa caatagtctt 
    1081 taatcaatcc tcaggagggg atccagaaat tgtaatgcac aattttaatt gtggggggga 
    1141 atttttctac tgtaattcgt caggactgtt taatagtact tggagtattg ataatgaaga 
    1201 gtcaaataac actgaaggca acagcacact catcacactc ccatgcagaa taaaacaaat 
    1261 tatagacatg tggcaggaag taggaaaagc aatgtatgcc cctcccatca gaggacaaat 
    1321 taactgttta tcaaatatta cagggctgtt attaacaaga gatggtggta ataacacaaa 
    1381 cgggactgag atcttcagac ctggaggagg agatatgagg gacaattgga gaagtgaatt 
    1441 atataaatat aaagtagtac aagttgaacc attaggaata gcac
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.