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LOCUS	    AF388157		    1260 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 750 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388157
VERSION     AF388157.1 GI:19071091
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Distinct patterns of emergence and fading of K103N and Y181C in
	    women with subtype A vs. D after single-dose nevirapine: HIVNET 012
  JOURNAL   J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
  PUBMED    16123677
REFERENCE   3 (bases 1 to 1260)
            Show all sequences for reference 3
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="750"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="from patient #750, 6-8 weeks post-partum mother
		     subtype: D"
     gene	     <1..>1260
		     /gene="pol"
     CDS	     <1..>1260
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84099.1"
		     /db_xref="GI:19071092"
		     /translation="PQITLWQRPLVTIKIEGQLKEALLDTGADDTVLEEINLPGKWKP
		     XMIGGIGGFIKVRQYDXILIEICGHKAIGTVLXGPTPVNIIGRNXLTQIGCTLNFPIS
		     PIXTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTXMEKEGKISRIGPENPYNTPIF
		     AIKKKDXTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLXWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVI
		     PLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT	493 a	 201 c	  259 g    288 t     19 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctt gtyacaataa agatagaggg acagctaaag 
      61 gaagctctat tagatacagg agcagatgat acagtactag aagaaataaa tttgccagga 
     121 aaatggaaac caaraatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 samatactca tagaaatctg tggrcataaa gcyataggta cagtattrrt aggacctaca 
     241 cctgtcaata taattggaag aaatttkttg actcagattg gctgcacttt aaattttcca 
     301 atyagtccta ttamaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcactaa cagaaatttg tacagakatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaggacrg tactaagtgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagatttctg ggaagttcaa ctaggaatac crcatcctgc agggctaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 gaagacttta gaaagtatac tgcattcacc atacctagtr taaacaatga gacaccgggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agaaccyttt agaaaacaaa atccagaaat ggttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa 
     901 atagaggaat taagggaaca tctattgarg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagtg 
    1021 carcctatac aactgccaga aaaagaaagc tggactgtca atgatataca gaagttagtg 
    1081 gggaaattaa attgggcaag ccagatttat ccaggaatta aagtaaggca actatgtaaa 
    1141 ctccttaggg gagccaaagc actgacagaa gtaataccac tgacagaaga agcagaayta 
    1201 gaactggcag aaaacaggga gattctaaaa gaaccagtac atggagtgta ttatgaccca 
//
last modified: Tue May 31 10:56 2022


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