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LOCUS AF388124 1260 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 765 from Uganda pol protein (pol) gene, partial cds
ACCESSION AF388124
VERSION AF388124.1 GI:19071025
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1260)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
women receiving single-dose nevirapine prophylaxis to prevent hiv-1
vertical transmission (hiv network for prevention trials 012 study)
JOURNAL J. Infect. Dis. 184 (7), 914-917 (2001)
PUBMED 11509999
REFERENCE 2 (bases 1 to 1260)
Show all sequences for reference 2
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1260
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="765"
/db_xref="taxon:11676"
/country="Uganda"
/note="from patient #765, 6-8 weeks post-partum mother
subtype: D"
gene <1..>1260
/gene="pol"
CDS <1..>1260
/gene="pol"
/note="protease and 5'' reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL84066.1"
/db_xref="GI:19071026"
/translation="PQITLWQRPIVTVKIGGQLXEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQIQVEICGQKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVP
LYEXFRKYTAFTIPSTNSETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPE
XVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPXKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCIRGAKALTEVV
PLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT 501 a 197 c 257 g 284 t 21 other
ORIGIN
1 cctcaaatca ctctttggca acgacccaty gtcacagtaa agataggggg acagctaarg
61 gaagctctrt tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat
181 caaatacaag tagaaatttg tggacagaaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca
301 attagyccta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt
361 aaacaatggc ckttgacaga agaaaaaata aaagcactaa cagaaatytg tacagaaatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag trgatttcag agarcttaat
541 aagagaactc aagacttttg ggaagttcaa ctaggaatac cacatcctgc aggrctaaaa
601 aagaaaaaat caataacagt actggatgtg ggtgatgcat atttttcygt tcccttatat
661 gaagrcttta gaaaatayac ygcattcacc atacctagta caaacagtga gacaccagga
721 attagatatc aatacaatgt gcttccacaa ggatggaaag ggtcaccggc aatattccag
781 agtagcatga taaaaatctt agaacctttt agaaaacaaa atccagaaat rgttatctac
841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacaaca tagaataaaa
901 atagaggagy taagggaaca cctattgaag tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccattyct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa aactgccaga maargaaagc tggactgtca atgatataca gaagttagtr
1081 ggraaattaa attgggcaag ccagatttat ccaggaatta aggtaagaca attatgcaaa
1141 tgcattaggg gagccaaagc actgacagaa gtagtaccac tgacagaaga agcagaatta
1201 gaattggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ytatgaccca
//
last modified: Tue May 31 10:56 2022