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LOCUS	    AF388124		    1260 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 765 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388124
VERSION     AF388124.1 GI:19071025
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="765"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="from patient #765, 6-8 weeks post-partum mother
		     subtype: D"
     gene	     <1..>1260
		     /gene="pol"
     CDS	     <1..>1260
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84066.1"
		     /db_xref="GI:19071026"
		     /translation="PQITLWQRPIVTVKIGGQLXEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIQVEICGQKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVP
		     LYEXFRKYTAFTIPSTNSETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPE
		     XVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPXKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCIRGAKALTEVV
		     PLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT	501 a	 197 c	  257 g    284 t     21 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccaty gtcacagtaa agataggggg acagctaarg 
      61 gaagctctrt tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat 
     181 caaatacaag tagaaatttg tggacagaaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca 
     301 attagyccta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt 
     361 aaacaatggc ckttgacaga agaaaaaata aaagcactaa cagaaatytg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag trgatttcag agarcttaat 
     541 aagagaactc aagacttttg ggaagttcaa ctaggaatac cacatcctgc aggrctaaaa 
     601 aagaaaaaat caataacagt actggatgtg ggtgatgcat atttttcygt tcccttatat 
     661 gaagrcttta gaaaatayac ygcattcacc atacctagta caaacagtga gacaccagga 
     721 attagatatc aatacaatgt gcttccacaa ggatggaaag ggtcaccggc aatattccag 
     781 agtagcatga taaaaatctt agaacctttt agaaaacaaa atccagaaat rgttatctac 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacaaca tagaataaaa 
     901 atagaggagy taagggaaca cctattgaag tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccattyct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa aactgccaga maargaaagc tggactgtca atgatataca gaagttagtr 
    1081 ggraaattaa attgggcaag ccagatttat ccaggaatta aggtaagaca attatgcaaa 
    1141 tgcattaggg gagccaaagc actgacagaa gtagtaccac tgacagaaga agcagaatta 
    1201 gaattggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ytatgaccca 
//
last modified: Tue May 31 10:56 2022


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