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LOCUS	    AF388094		    1260 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 574 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388094
VERSION     AF388094.1 GI:19070965
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="574"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="from patient #574, 6-8 weeks post-partum mother
		     subtype: A"
     gene	     <1..>1260
		     /gene="pol"
     CDS	     <1..>1260
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84036.1"
		     /db_xref="GI:19070966"
		     /translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTXMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRSKNPE
		     IIIYQYMDDLYVGSDLEIGQHRXKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
		     ALTEEAELELAENREILKDPVHGVYYDP"
BASE COUNT	497 a	 197 c	  266 g    295 t      5 other
ORIGIN
       1 cctcaaatca ctctttggca acgacctctt gtcacagtaa gaataggggg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtatgat 
     181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattggt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg acccagattg gttgtacttt aaatttccca 
     301 attagtccta ttgatactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagakatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt 
     481 gctataaaga aaaaagatag cactaaatgg agaaaattag tggatttcag agagctcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cgcatccagc gggcttaaaa 
     601 aagaaaaaat cagtaacagt actagatgta ggggatgcat atttttcagt tcccttggat 
     661 gaaggcttta gaaagtatac tgcattcacy atacctagta caaacaatga gacaccagga 
     721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccag 
     781 agyagcatga taaaaatctt agagcccttt agatcaaaaa atccagaaat aattatctat 
     841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcagca cagarcaaaa 
     901 atagaagagt taagagaaca tctattaaaa tggggattta ctacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atccggacaa gtggacagtc 
    1021 caacctatag agctgccaga aaaagaaagc tggactgtca atgatataca gaaattggta 
    1081 ggaaaactra attgggcaag ccaaatttat gcaggaatta aagtaaagca attatgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat atagtagcat tgactgagga agcagaatta 
    1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca 
//
last modified: Tue May 31 10:56 2022


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