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LOCUS AF388094 1260 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 574 from Uganda pol protein (pol) gene, partial cds
ACCESSION AF388094
VERSION AF388094.1 GI:19070965
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1260)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
women receiving single-dose nevirapine prophylaxis to prevent hiv-1
vertical transmission (hiv network for prevention trials 012 study)
JOURNAL J. Infect. Dis. 184 (7), 914-917 (2001)
PUBMED 11509999
REFERENCE 2 (bases 1 to 1260)
Show all sequences for reference 2
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1260
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="574"
/db_xref="taxon:11676"
/country="Uganda"
/note="from patient #574, 6-8 weeks post-partum mother
subtype: A"
gene <1..>1260
/gene="pol"
CDS <1..>1260
/gene="pol"
/note="protease and 5'' reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL84036.1"
/db_xref="GI:19070966"
/translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTXMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRSKNPE
IIIYQYMDDLYVGSDLEIGQHRXKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
ALTEEAELELAENREILKDPVHGVYYDP"
BASE COUNT 497 a 197 c 266 g 295 t 5 other
ORIGIN
1 cctcaaatca ctctttggca acgacctctt gtcacagtaa gaataggggg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattggt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg acccagattg gttgtacttt aaatttccca
301 attagtccta ttgatactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagakatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt
481 gctataaaga aaaaagatag cactaaatgg agaaaattag tggatttcag agagctcaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cgcatccagc gggcttaaaa
601 aagaaaaaat cagtaacagt actagatgta ggggatgcat atttttcagt tcccttggat
661 gaaggcttta gaaagtatac tgcattcacy atacctagta caaacaatga gacaccagga
721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccag
781 agyagcatga taaaaatctt agagcccttt agatcaaaaa atccagaaat aattatctat
841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcagca cagarcaaaa
901 atagaagagt taagagaaca tctattaaaa tggggattta ctacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atccggacaa gtggacagtc
1021 caacctatag agctgccaga aaaagaaagc tggactgtca atgatataca gaaattggta
1081 ggaaaactra attgggcaag ccaaatttat gcaggaatta aagtaaagca attatgtaaa
1141 ctcctcaggg gagccaaagc actaacagat atagtagcat tgactgagga agcagaatta
1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca
//
last modified: Tue May 31 10:56 2022