HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF254714		     718 bp    DNA     linear	VRL 15-MAR-2002
DEFINITION  HIV-1 clone NT51/.17 from Tanzania 5' long terminal repeat,
	    complete sequence
ACCESSION   AF254714
VERSION     AF254714.1 GI:13897608
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 718)
            Show all sequences for reference 1
  AUTHORS   Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
	    Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
	    Essex,M.
  TITLE     HIV-1 LTR subtype and perinatal transmission
  JOURNAL   Virology 287 (2), 261-265 (2001)
  PUBMED    11531404
REFERENCE   2 (bases 1 to 718)
            Show all sequences for reference 2
  AUTHORS   Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
	    Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
	    Essex,M.
  TITLE     The long terminal repeat of the human immunodeficiency virus type 1
	    contains determinants associated with perinatal transmission
  JOURNAL   Unpublished
REFERENCE   3 (bases 1 to 718)
            Show all sequences for reference 3
  AUTHORS   Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
	    Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
	    Essex,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2000) Department of Immunology and Infectious
	    Diseases, Harvard AIDS Institute and the Harvard School of Public
	    Health, 651 Huntington Avenue, Boston, MA 02445, USA
COMMENT     Sample date is approximate; study recruitment dates were 4/1995 -
	    7/1997, and continued 18 mos post-recruitment (Fawzi et al, 1999;
	    PMID 10839660).
FEATURES             Location/Qualifiers
     source	     1..718
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11676"
		     /clone="NT51/.17"
		     /country="Tanzania"
		     /note="isolated from peripheral blood mononuclear cells"
     LTR	     1..718
		     /note="5'' long terminal repeat (U3 through 5''UTR)"
BASE COUNT	193 a	 164 c	  211 g    149 t      1 other
ORIGIN
       1 caaggatcct tccctgattg gcagaactcc acaccagggc cagggaccag gttcccacta 
      61 acgtttggat ggtgcttcaa actagtacca gttgagccag atgaagtaga gaaggctacc 
     121 gaaggagaga acaacagcct attacaccct atatgccaac atggaatgga tgatgaagag 
     181 agagagacat taatgtggaa gtttgacagc cgcctggcac taaaacaccg agccaaagag 
     241 ctgcatccgg agttctacaa agactgctga cacagaagtt gctgacaggg actttccgct 
     301 ggggactttc caggggaggt gtggtttggg cggagttggg gagtggctaa ccctcagaag 
     361 ctgcatataa gcagccgctt ttcgcttgta ctgggtctct ctggtagacc agattgagcc 
     421 tgggagctct ctggctagca ggggaaccca ctgcttaaag cctcaataaa gcttgccttg 
     481 agtgcctcaa gcagtgtgtg cccgtctgtt gtgtgactct ggtaactaga gatccctcag 
     541 accactttag actgagtaaa aatctctagc agtggcgccc gaacagggac tcgaaagcga 
     601 aagttccaga gaagttctct cgacgcagga ctcgggatga tgaggtgcac acagcaagag 
     661 gcgagagcgg ngactggtga gtacgccaat ttttgactag cggagggtag aaggagag
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.