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LOCUS AF254694 725 bp DNA linear VRL 15-MAR-2002
DEFINITION HIV-1 clone NT25.4/ from Tanzania 5' long terminal repeat, complete
sequence
ACCESSION AF254694
VERSION AF254694.1 GI:13897588
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 725)
Show all sequences for reference 1
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE HIV-1 LTR subtype and perinatal transmission
JOURNAL Virology 287 (2), 261-265 (2001)
PUBMED 11531404
REFERENCE 2 (bases 1 to 725)
Show all sequences for reference 2
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE The long terminal repeat of the human immunodeficiency virus type 1
contains determinants associated with perinatal transmission
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 725)
Show all sequences for reference 3
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2000) Department of Immunology and Infectious
Diseases, Harvard AIDS Institute and the Harvard School of Public
Health, 651 Huntington Avenue, Boston, MA 02445, USA
COMMENT Sample date is approximate; study recruitment dates were 4/1995 -
7/1997, and continued 18 mos post-recruitment (Fawzi et al, 1999;
PMID 10839660).
FEATURES Location/Qualifiers
source 1..725
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/db_xref="taxon:11676"
/clone="NT25.4/"
/country="Tanzania"
/note="isolated from peripheral blood mononuclear cells"
LTR 1..725
/note="5'' long terminal repeat (U3 through 5''UTR)"
BASE COUNT 192 a 166 c 207 g 160 t
ORIGIN
1 atccttccct gattggcaga actgcacacc agggccaggg accaggttcc cactaacatt
61 tggatggtgc ttcaagctag taccagttga tccagaagca gtagagaagg ctaatgaggg
121 agagaacaac agcttattac accctatatg ccagcatggg atggatgatg atgagaaaga
181 agtattaatg tggaagtttg acagcaaact ggcattaaga cacctagccc gagagatgca
241 tccggagttc tacaaagact gctgacacag actgctgaca cagaagttgc tgacagagct
301 ttccgctggg gactttccag gggaggtgtg gtttgggcgg agttggggag tggctaaccc
361 tcagatgctg catataagca gctgcttttc gcctgtactg ggtctctctt gttagaccag
421 atcgagcctg ggagctctct gcctagcaag ggaacccact gcttaagccc caataaagct
481 tgccttgagt gcttcaagta gtgtgtgccc gtctgttgtg tgactctggt aactagagat
541 ccctcagacc actctagact gaataaaaat ctctagcagt ggcgcccgaa cagggactcg
601 aaagcgaaag ttccagagaa gttctctcga cgcaggactc ggcttgctga ggtgcacaca
661 gcaagaggcg agagcggcga ctggtgagta cgccaatttt tgactagcgg aggctagaag
721 gagag
//
last modified: Tue May 31 10:56 2022