HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF186541		     297 bp    RNA     linear	VRL 07-JUN-2000
DEFINITION  HIV-1 clone CF1 protease (pol) gene, partial cds
ACCESSION   AF186541
VERSION     AF186541.1 GI:8307853
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Shafer,R.W., Warford,A., Winters,M.A. and Gonzales,M.J.
  TITLE     Reproducibility of human immunodeficiency virus type 1 (HIV-1)
	    protease and reverse transcriptase sequencing of plasma samples
	    from heavily treated HIV-1-infected individuals
  JOURNAL   J. Virol. Methods 86 (2), 143-153 (2000)
  PUBMED    10785289
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Shafer,R.W., Warford,A., Winters,M.A. and Gonzales,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-1999) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University, Stanford University
	    Medical Center, Room S-156, Stanford, CA 94305, USA
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /db_xref="taxon:11676"
		     /clone="CF1"
		     /note="sequence obtained through direct PCR sequencing of
		     plasma"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAF74357.1"
		     /db_xref="GI:8307854"
		     /translation="PQITLWQRPIVTVKIGGQIKEALLDTGADDTVLEEMNLPGRWKP
		     KLIGGIGGFIKVRQYDQIPIEICGHKVIGTVLIGPTPVNIIGRDLLTQIGCTLNF"
BASE COUNT	107 a	  45 c	   69 g     76 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccatc gtcacagtaa agataggggg gcaaataaag 
      61 gaagctctat tggatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaattgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gttataggta cagtattaat agggcctaca 
     241 cctgtcaaca taattggaag agatttgttg actcagattg gttgcactct aaatttt
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.