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LOCUS	    AF137713		     597 bp    DNA     linear	VRL 08-FEB-2000
DEFINITION  HIV-1 p1c077-313 from USA envelope glycoprotein (env) gene, partial
	    cds
ACCESSION   AF137713
VERSION     AF137713.1 GI:6933977
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 597)
            Show all sequences for reference 1
  AUTHORS   Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
	    Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
	    He,X., Huang,X.-L. and Mullins,J.I.
  TITLE     Consistent viral evolutionary changes associated with the
	    progression of human immunodeficiency virus type 1 infection
  JOURNAL   J. Virol. 73 (12), 10489-10502 (1999)
  PUBMED    10559367
REFERENCE   2 (bases 1 to 597)
            Show all sequences for reference 2
  AUTHORS   Shankarappa,R., Margolick,J.B., Farzadegan,H., Gange,S.J.,
	    Gupta,P., Rinaldo,C.R., Upchurch,D., Rodrigo,A.G., Learn,G.H.,
	    Huang,X.-L., Fan,Z. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-1999) Department of Microbiology, University of
	    Washington, Box 357740, Seattle, WA 98195-7740, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
	    He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
	    Mullins,J.I.
  CONSRTM   Multicenter AIDS Cohort Study
  TITLE     Improved Coreceptor Usage Prediction and Genotypic Monitoring of
	    R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
	    Virus Type 1 env V3 Loop Sequences
  JOURNAL   J. Virol. 77 (24), 13376-13388 (2003)
  PUBMED    14645592
COMMENT     Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
	    the 3-digit number in each sample name is months
	    post-seroconversion. Sampling years are estimated based on
	    enrollment in 1983-84 incremented by months post-seroconversion.
	    Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES             Location/Qualifiers
     source	     1..597
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11676"
		     /clone="p1c077-313"
		     /country="USA"
     gene	     <1..>597
		     /gene="env"
     CDS	     <1..>597
		     /gene="env"
		     /note="gp120; C2-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAF31580.1"
		     /db_xref="GI:6934114"
		     /translation="EKEVVIRSENFTDNAKTIIVQLNESVVINCTRPSNNTRRSIAVG
		     PGRAFYATDKIIGDIRKAHCNLSRTAWNNTLRQIVEKLREQFGNKTIVFNRSSGGDPE
		     IVMHSFNCGGEFFYCNTTQLFNSTWNTSTLNNATEGSETIILQCRIKQIINMWQEVGK
		     AMYAPPINGQIRCSSNITGLLLTRDGGNNINNTEIFRPG"
BASE COUNT	242 a	  88 c	  120 g    147 t
ORIGIN
       1 gaaaaagagg tagtaattag atctgaaaat ttcacggaca atgctaaaac cataatagta 
      61 cagctgaatg agtctgtagt aattaattgt acaagaccca gtaacaatac aagaagaagt 
     121 atagcggtag gaccaggaag agcattttat gcaacagata aaataatagg agatataaga 
     181 aaagcacatt gtaaccttag tagaacagca tggaataaca ctttgagaca gatagttgaa 
     241 aaattaagag aacaatttgg gaataaaaca atagtcttta atcgatcctc aggaggggat 
     301 ccagaaattg tgatgcacag ttttaattgt ggaggggaat ttttctactg taatacaaca 
     361 caactgttta atagtacttg gaatactagt actttaaata atgctactga agggtcagag 
     421 acgatcatac tccaatgcag aataaaacaa attataaaca tgtggcagga agtaggaaaa 
     481 gcaatgtatg cccctcccat caacggacaa attagatgtt catcaaatat tacagggctg 
     541 ctattaacaa gagatggtgg caataacata aacaatactg aaatcttcag acctgga
//
last modified: Tue May 31 10:56 2022


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