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LOCUS AF137710 597 bp DNA linear VRL 08-FEB-2000
DEFINITION HIV-1 p1c077-307 from USA envelope glycoprotein (env) gene, partial
cds
ACCESSION AF137710
VERSION AF137710.1 GI:6933974
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 597)
Show all sequences for reference 1
AUTHORS Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
He,X., Huang,X.-L. and Mullins,J.I.
TITLE Consistent viral evolutionary changes associated with the
progression of human immunodeficiency virus type 1 infection
JOURNAL J. Virol. 73 (12), 10489-10502 (1999)
PUBMED 10559367
REFERENCE 2 (bases 1 to 597)
Show all sequences for reference 2
AUTHORS Shankarappa,R., Margolick,J.B., Farzadegan,H., Gange,S.J.,
Gupta,P., Rinaldo,C.R., Upchurch,D., Rodrigo,A.G., Learn,G.H.,
Huang,X.-L., Fan,Z. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-1999) Department of Microbiology, University of
Washington, Box 357740, Seattle, WA 98195-7740, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
Mullins,J.I.
CONSRTM Multicenter AIDS Cohort Study
TITLE Improved Coreceptor Usage Prediction and Genotypic Monitoring of
R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
Virus Type 1 env V3 Loop Sequences
JOURNAL J. Virol. 77 (24), 13376-13388 (2003)
PUBMED 14645592
COMMENT Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
the 3-digit number in each sample name is months
post-seroconversion. Sampling years are estimated based on
enrollment in 1983-84 incremented by months post-seroconversion.
Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES Location/Qualifiers
source 1..597
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/db_xref="taxon:11676"
/clone="p1c077-307"
/country="USA"
gene <1..>597
/gene="env"
CDS <1..>597
/gene="env"
/note="gp120; C2-V5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAF31577.1"
/db_xref="GI:6934111"
/translation="EKEVVIRSENFTDNAKTIIVQLNESVVINCTRPSNNTRRSITVG
PGRAIYATDKIIGDIRKAHCNLSRTAWNNTLRQIVEKLREQFGNKTIVFNRSSGGDPE
IVMHSFNCGGEFFYCNTTQLFNSTWNTSTLNNVTEGSETIILQCRIKQIINMWQEVGK
AMYAPPINGQIRCSSDITGLLLTRDGGNNTNNTEIFRPG"
BASE COUNT 243 a 90 c 120 g 144 t
ORIGIN
1 gaaaaagagg tagtaattag atctgaaaat ttcacggaca atgctaaaac cataatagta
61 cagctgaatg agtctgtagt aattaattgt acaagaccca gtaacaatac aagaagaagt
121 ataacggtag gaccagggag agcaatttat gcaacagata aaataatagg agatataaga
181 aaagcacatt gtaaccttag tagaacagca tggaataaca ctttaagaca gatagttgag
241 aaattaagag aacaatttgg gaataaaaca atagtcttta atcgatcctc aggaggggac
301 ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg caatacaaca
361 caactgttta atagtacttg gaatactagt actttaaata atgttactga agggtcagag
421 acgatcatac tccaatgcag aataaaacaa attataaaca tgtggcagga agtaggaaaa
481 gcaatgtatg cccctcccat caacggacaa attagatgtt catcagatat tacagggctg
541 ctattaacaa gagatggtgg caataacaca aacaatactg aaatcttcag acctgga
//
last modified: Tue May 31 10:56 2022