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LOCUS	    AF137685		     609 bp    DNA     linear	VRL 08-FEB-2000
DEFINITION  HIV-1 p1c061-10 from USA envelope glycoprotein (env) gene, partial
	    cds
ACCESSION   AF137685
VERSION     AF137685.1 GI:6933949
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 609)
            Show all sequences for reference 1
  AUTHORS   Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
	    Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
	    He,X., Huang,X.-L. and Mullins,J.I.
  TITLE     Consistent viral evolutionary changes associated with the
	    progression of human immunodeficiency virus type 1 infection
  JOURNAL   J. Virol. 73 (12), 10489-10502 (1999)
  PUBMED    10559367
REFERENCE   2 (bases 1 to 609)
            Show all sequences for reference 2
  AUTHORS   Shankarappa,R., Margolick,J.B., Farzadegan,H., Gange,S.J.,
	    Gupta,P., Rinaldo,C.R., Upchurch,D., Rodrigo,A.G., Learn,G.H.,
	    Huang,X.-L., Fan,Z. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-1999) Department of Microbiology, University of
	    Washington, Box 357740, Seattle, WA 98195-7740, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
	    He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
	    Mullins,J.I.
  CONSRTM   Multicenter AIDS Cohort Study
  TITLE     Improved Coreceptor Usage Prediction and Genotypic Monitoring of
	    R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
	    Virus Type 1 env V3 Loop Sequences
  JOURNAL   J. Virol. 77 (24), 13376-13388 (2003)
  PUBMED    14645592
COMMENT     Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
	    the 3-digit number in each sample name is months
	    post-seroconversion. Sampling years are estimated based on
	    enrollment in 1983-84 incremented by months post-seroconversion.
	    Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES             Location/Qualifiers
     source	     1..609
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11676"
		     /clone="p1c061-10"
		     /country="USA"
     gene	     <1..>609
		     /gene="env"
     CDS	     <1..>609
		     /gene="env"
		     /note="gp120; C2-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAF31552.1"
		     /db_xref="GI:6934086"
		     /translation="EKEVVIRSENFTDNAKTIIVQLNESVVINCTRPSNNTRKSIPVG
		     PGRAIYATGEIIGNIRQAHCNLSRAEWNNTLKQIVEKLREQSGNKTIVFNRSSGGDPE
		     IVMHSFNCGGEFFYCNSTQLFNSTWNSTLNNVTKGSNSTEENITLPCKIKQIINMWQE
		     VGKAMYAPPIRGQIRCSSNITGLLLTRDGGKNTSSTTEIFRPG"
BASE COUNT	247 a	  94 c	  124 g    144 t
ORIGIN
       1 gaaaaagagg tagtaattag atctgaaaat ttcacggaca atgctaaaac cataatagta 
      61 cagctgaatg agtctgtagt aattaattgt acaagaccca gtaacaatac aagaaaaagt 
     121 ataccggtag gaccagggag agcaatttat gcaacaggag aaataatagg aaatataaga 
     181 caagcacatt gtaaccttag tagagcagaa tggaataaca ctttaaaaca gatagttgag 
     241 aaattaagag aacaatctgg gaataaaaca atagtcttta atcgatcctc aggaggggac 
     301 ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg taattcaaca 
     361 caactgttta atagtacttg gaatagtact ttgaataatg ttactaaagg gtcaaatagc 
     421 actgaagaga atatcacact cccatgcaaa ataaaacaaa ttataaacat gtggcaggaa 
     481 gtaggaaaag caatgtatgc ccctcccatc agaggacaaa ttagatgttc atcaaatatt 
     541 acagggctgc tattaacaag agatggtggt aagaacacga gcagcactac cgaaatcttc 
     601 agacctgga
//
last modified: Tue May 31 10:56 2022


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