HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF137665		     597 bp    DNA     linear	VRL 08-FEB-2000
DEFINITION  HIV-1 p1c045-81 from USA envelope glycoprotein (env) gene, partial
	    cds
ACCESSION   AF137665
VERSION     AF137665.1 GI:6933929
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 597)
            Show all sequences for reference 1
  AUTHORS   Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
	    Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
	    He,X., Huang,X.-L. and Mullins,J.I.
  TITLE     Consistent viral evolutionary changes associated with the
	    progression of human immunodeficiency virus type 1 infection
  JOURNAL   J. Virol. 73 (12), 10489-10502 (1999)
  PUBMED    10559367
REFERENCE   2 (bases 1 to 597)
            Show all sequences for reference 2
  AUTHORS   Shankarappa,R., Margolick,J.B., Farzadegan,H., Gange,S.J.,
	    Gupta,P., Rinaldo,C.R., Upchurch,D., Rodrigo,A.G., Learn,G.H.,
	    Huang,X.-L., Fan,Z. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-1999) Department of Microbiology, University of
	    Washington, Box 357740, Seattle, WA 98195-7740, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
	    He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
	    Mullins,J.I.
  CONSRTM   Multicenter AIDS Cohort Study
  TITLE     Improved Coreceptor Usage Prediction and Genotypic Monitoring of
	    R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
	    Virus Type 1 env V3 Loop Sequences
  JOURNAL   J. Virol. 77 (24), 13376-13388 (2003)
  PUBMED    14645592
COMMENT     Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
	    the 3-digit number in each sample name is months
	    post-seroconversion. Sampling years are estimated based on
	    enrollment in 1983-84 incremented by months post-seroconversion.
	    Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES             Location/Qualifiers
     source	     1..597
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11676"
		     /clone="p1c045-81"
		     /country="USA"
     gene	     <1..>597
		     /gene="env"
     CDS	     <1..>597
		     /gene="env"
		     /note="gp120; C2-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAF31532.1"
		     /db_xref="GI:6934066"
		     /translation="EEEVVIRSENFTDNAKTIIVQLKESVVINCTRPNNNTRKSMQVG
		     PGRAIYATGEIIGDIRQAHCNLSRAEWNNTLKQIAKKLREQFGNKTIVFNRSSGGDPE
		     IVMHSFNCGGEFFYCNTTQLFNSTWNTSTLNNVTEGSENITLPCRIKQIINMWQEVGK
		     AMYAPPIRGQIRCSSNITGLLLTRDGGSNTNNTEIFRPG"
BASE COUNT	242 a	  90 c	  123 g    142 t
ORIGIN
       1 gaagaagagg tagtaattag atctgaaaat ttcacggaca atgctaaaac cataatagta 
      61 cagctaaagg agtctgtagt aattaattgt acaagaccca ataacaatac aagaaaaagt 
     121 atgcaggtag gaccagggag agcaatttat gcaacaggag aaataatagg agatataaga 
     181 caagcacatt gtaaccttag tagagcagaa tggaataaca ctttaaaaca gatagctaag 
     241 aaattaagag aacaatttgg gaataaaaca atagtcttta atcgatcctc aggaggggac 
     301 ccagaaattg tgatgcacag ttttaattgt ggaggggaat ttttctactg taatacaaca 
     361 caactgttta atagtacttg gaatactagt actttgaata atgttactga agggtcagag 
     421 aatatcacac tcccatgcag aataaaacaa attataaaca tgtggcagga agtaggaaaa 
     481 gcaatgtatg cccctcccat cagaggacaa attagatgtt catcaaatat tacagggctg 
     541 ctattaacaa gagatggtgg cagtaacaca aacaatactg aaatcttcag acctgga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.