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LOCUS AF137641 606 bp DNA linear VRL 08-FEB-2000
DEFINITION HIV-1 p1c014-27 from USA envelope glycoprotein (env) gene, partial
cds
ACCESSION AF137641
VERSION AF137641.1 GI:6933905
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 606)
Show all sequences for reference 1
AUTHORS Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
He,X., Huang,X.-L. and Mullins,J.I.
TITLE Consistent viral evolutionary changes associated with the
progression of human immunodeficiency virus type 1 infection
JOURNAL J. Virol. 73 (12), 10489-10502 (1999)
PUBMED 10559367
REFERENCE 2 (bases 1 to 606)
Show all sequences for reference 2
AUTHORS Shankarappa,R., Margolick,J.B., Farzadegan,H., Gange,S.J.,
Gupta,P., Rinaldo,C.R., Upchurch,D., Rodrigo,A.G., Learn,G.H.,
Huang,X.-L., Fan,Z. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-1999) Department of Microbiology, University of
Washington, Box 357740, Seattle, WA 98195-7740, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
Mullins,J.I.
CONSRTM Multicenter AIDS Cohort Study
TITLE Improved Coreceptor Usage Prediction and Genotypic Monitoring of
R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
Virus Type 1 env V3 Loop Sequences
JOURNAL J. Virol. 77 (24), 13376-13388 (2003)
PUBMED 14645592
COMMENT Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
the 3-digit number in each sample name is months
post-seroconversion. Sampling years are estimated based on
enrollment in 1983-84 incremented by months post-seroconversion.
Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES Location/Qualifiers
source 1..606
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/db_xref="taxon:11676"
/clone="p1c014-27"
/country="USA"
gene <1..>606
/gene="env"
CDS <1..>606
/gene="env"
/note="gp120; C2-V5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAF31508.1"
/db_xref="GI:6934042"
/translation="EEEVVIRSENFMDNAKTIIVQLRESVVINCTRPNNNTRKSIQVG
PGKAIYTTGEIIGDIRQAHCNLSRAEWNNTLKQIVKRLREQFGNKTIVFNQSSGGDPE
IVMHSFNCGGEFFYCNSTQLFNSTWDNSTLNNVTEGSNSTEENITLPCRIKQIINMWQ
EVGKAMYAPPIRGQIRCSSNITGLLLTRDGGNTSNTEVFRPG"
BASE COUNT 244 a 88 c 127 g 147 t
ORIGIN
1 gaagaagagg tagtaattag atctgagaat ttcatggaca atgctaaaac cataatagta
61 cagctgaggg agtctgtagt aattaattgt acaagaccca ataacaatac aagaaaaagt
121 atacaggtag gaccagggaa agcaatttat acaacaggag aaataatagg agatataaga
181 caagcacatt gtaaccttag tagagcagaa tggaataaca ctttaaaaca gatagttaag
241 agattaagag aacaatttgg gaataaaaca atagtcttta atcaatcctc aggaggggat
301 ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg taattcaaca
361 caactgttta atagtacttg ggataatagt actctgaata atgttactga agggtcaaat
421 agcactgaag agaatatcac actcccatgt agaataaaac aaattataaa catgtggcag
481 gaagtaggaa aagcaatgta tgcccctccc atcagaggac aaattagatg ttcatcaaat
541 attacagggc tgctattaac aagagatggt ggtaacacga gcaataccga agtcttcaga
601 cctgga
//
last modified: Tue May 31 10:56 2022