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LOCUS	    AF125870		    1023 bp    DNA     linear	VRL 25-JUN-1999
DEFINITION  HIV-1 isolate 222T1D from USA envelope glycoprotein, V1-V5 region
	    (env) gene, partial cds
ACCESSION   AF125870
VERSION     AF125870.1 GI:5199305
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1023)
            Show all sequences for reference 1
  AUTHORS   Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.T.,
	    Xin,K.Q., Okuda,K., Petito,C.K., Eisdorfer,C. and Goodkin,K.
  TITLE     Independent evolution of HIV type 1 in different brain regions
  JOURNAL   AIDS Res. Hum. Retroviruses 15 (9), 811-820 (1999)
  PUBMED    10381169
REFERENCE   2 (bases 1 to 1023)
            Show all sequences for reference 2
  AUTHORS   Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.-T.,
	    Xin,K.-Q., Petito,C.K., Eisdorfer,C. and Goodkin,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-1999) Psychiatry and Behavioral Sciences,
	    University of Miami School of Medicine, Elliot Building, Room 2026,
	    1800 NW 10th Avenue, Miami, FL 33136, USA
FEATURES             Location/Qualifiers
     source	     1..1023
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="222T1D"
		     /db_xref="taxon:11676"
		     /country="USA:Florida, Miami"
		     /note="first number = patient code; number letter = brain
		     region: F = frontal lobe; T = temporal lobe cortex; G =
		     basal ganglia; M = medial temporal lobe; next number is
		     clone number; final letter indicates DNA (D) or RNA (R)"
     gene	     <1..>1023
		     /gene="env"
     CDS	     <1..>1023
		     /gene="env"
		     /note="V1-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAD40794.1"
		     /db_xref="GI:5199306"
		     /translation="TPLCVTLNCTDLKNRTIANNDTEIEMKNCSFKITSNMRDKMHTE
		     YALFYKLDIVQIDNDNTSYRLISCNASVITQACPKVSFEPIPIHYCTPPGFALLKCKD
		     KKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSKNFSNNANNIIVQL
		     NESVAINCTRPNNNTRKSIHMVPGKAFYATGDIIGNIRQAHCNLSETDWNKTLKHVAE
		     KLREQFKATQIVFDQSSGGDPEIVMHSFNCGGEFFYCDTTPLFNSTWSSNSTISNGTG
		     KSNNITLQCRIKQIINMWQEVGKAMYAPPIKGQIRCSSNITGLILTRDGGNNRNGTEV
		     FRLGGEA"
BASE COUNT	400 a	 168 c	  188 g    267 t
ORIGIN
       1 accccactct gtgttacttt aaattgcact gatttgaaaa ataggactat tgccaacaat 
      61 gatactgaga tagaaatgaa aaactgctct ttcaagatca cctcaaacat gagagataaa 
     121 atgcatacgg aatatgcact tttttataaa cttgatatag tacaaataga taatgataat 
     181 actagctata ggttaataag ttgtaacgcc tcagtcatta cacaggcttg tccaaaggta 
     241 tcctttgaac caattcccat acattattgt accccgcctg gttttgcact tctaaagtgt 
     301 aaggataaga agttcaatgg aacaggacca tgtaaaaatg ttagcacagt acaatgtaca 
     361 catggaatta agccagtagt gtcaactcaa ctgctattaa atggcagtct agcagaagaa 
     421 gaggtaataa ttagatctaa gaattttagt aataatgcta ataacataat agtacagcta 
     481 aatgaatctg tagcaattaa ttgtaccaga cctaacaaca atacaaggaa aagtatacat 
     541 atggtaccag gaaaagcatt ttatgcaaca ggagatataa taggaaatat aagacaagca 
     601 cattgtaacc tcagtgaaac agactggaat aaaaccttaa aacatgtagc cgaaaaatta 
     661 agagaacaat ttaaagcaac acaaatagtc tttgatcaat cctcaggagg ggacccagaa 
     721 attgtaatgc acagttttaa ttgtggaggg gaatttttct actgtgacac aacacccctg 
     781 tttaatagta cttggagtag taatagtact atttcaaatg gaactggaaa gtcaaataat 
     841 atcacactcc aatgcagaat aaaacaaatt ataaacatgt ggcaggaagt aggaaaagca 
     901 atgtatgccc ctcccatcaa aggacaaatt agatgttcat caaatattac agggctgata 
     961 ttaacaagag atggtggtaa taacagaaat gggactgagg tcttcagact tggaggagaa 
    1021 gct
//
last modified: Tue May 31 10:56 2022


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