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LOCUS AF125870 1023 bp DNA linear VRL 25-JUN-1999
DEFINITION HIV-1 isolate 222T1D from USA envelope glycoprotein, V1-V5 region
(env) gene, partial cds
ACCESSION AF125870
VERSION AF125870.1 GI:5199305
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1023)
Show all sequences for reference 1
AUTHORS Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.T.,
Xin,K.Q., Okuda,K., Petito,C.K., Eisdorfer,C. and Goodkin,K.
TITLE Independent evolution of HIV type 1 in different brain regions
JOURNAL AIDS Res. Hum. Retroviruses 15 (9), 811-820 (1999)
PUBMED 10381169
REFERENCE 2 (bases 1 to 1023)
Show all sequences for reference 2
AUTHORS Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.-T.,
Xin,K.-Q., Petito,C.K., Eisdorfer,C. and Goodkin,K.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-1999) Psychiatry and Behavioral Sciences,
University of Miami School of Medicine, Elliot Building, Room 2026,
1800 NW 10th Avenue, Miami, FL 33136, USA
FEATURES Location/Qualifiers
source 1..1023
/organism="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="222T1D"
/db_xref="taxon:11676"
/country="USA:Florida, Miami"
/note="first number = patient code; number letter = brain
region: F = frontal lobe; T = temporal lobe cortex; G =
basal ganglia; M = medial temporal lobe; next number is
clone number; final letter indicates DNA (D) or RNA (R)"
gene <1..>1023
/gene="env"
CDS <1..>1023
/gene="env"
/note="V1-V5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAD40794.1"
/db_xref="GI:5199306"
/translation="TPLCVTLNCTDLKNRTIANNDTEIEMKNCSFKITSNMRDKMHTE
YALFYKLDIVQIDNDNTSYRLISCNASVITQACPKVSFEPIPIHYCTPPGFALLKCKD
KKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSKNFSNNANNIIVQL
NESVAINCTRPNNNTRKSIHMVPGKAFYATGDIIGNIRQAHCNLSETDWNKTLKHVAE
KLREQFKATQIVFDQSSGGDPEIVMHSFNCGGEFFYCDTTPLFNSTWSSNSTISNGTG
KSNNITLQCRIKQIINMWQEVGKAMYAPPIKGQIRCSSNITGLILTRDGGNNRNGTEV
FRLGGEA"
BASE COUNT 400 a 168 c 188 g 267 t
ORIGIN
1 accccactct gtgttacttt aaattgcact gatttgaaaa ataggactat tgccaacaat
61 gatactgaga tagaaatgaa aaactgctct ttcaagatca cctcaaacat gagagataaa
121 atgcatacgg aatatgcact tttttataaa cttgatatag tacaaataga taatgataat
181 actagctata ggttaataag ttgtaacgcc tcagtcatta cacaggcttg tccaaaggta
241 tcctttgaac caattcccat acattattgt accccgcctg gttttgcact tctaaagtgt
301 aaggataaga agttcaatgg aacaggacca tgtaaaaatg ttagcacagt acaatgtaca
361 catggaatta agccagtagt gtcaactcaa ctgctattaa atggcagtct agcagaagaa
421 gaggtaataa ttagatctaa gaattttagt aataatgcta ataacataat agtacagcta
481 aatgaatctg tagcaattaa ttgtaccaga cctaacaaca atacaaggaa aagtatacat
541 atggtaccag gaaaagcatt ttatgcaaca ggagatataa taggaaatat aagacaagca
601 cattgtaacc tcagtgaaac agactggaat aaaaccttaa aacatgtagc cgaaaaatta
661 agagaacaat ttaaagcaac acaaatagtc tttgatcaat cctcaggagg ggacccagaa
721 attgtaatgc acagttttaa ttgtggaggg gaatttttct actgtgacac aacacccctg
781 tttaatagta cttggagtag taatagtact atttcaaatg gaactggaaa gtcaaataat
841 atcacactcc aatgcagaat aaaacaaatt ataaacatgt ggcaggaagt aggaaaagca
901 atgtatgccc ctcccatcaa aggacaaatt agatgttcat caaatattac agggctgata
961 ttaacaagag atggtggtaa taacagaaat gggactgagg tcttcagact tggaggagaa
1021 gct
//
last modified: Tue May 31 10:56 2022