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LOCUS AF028328 381 bp DNA linear VRL 29-SEP-2000
DEFINITION HIV-1 isolate CMR890 from Cameroon, envelope glycoprotein C2V3C3V4
region (env) gene, partial cds
ACCESSION AF028328
VERSION AF028328.1 GI:6006658
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 381)
Show all sequences for reference 1
AUTHORS Mboudjeka,I., Bikandou,B., Zekeng,L., Takehisa,J., Harada,Y.,
Yamaguchi-Kabata,Y., Taniguchi,Y., Ido,E., Parra,H., Kaptue,L.,
M'pelle,P., M'Pele,P., Parra,H.J., Ikeda,M., Hayami,M. and
Miura,T.
TITLE Genetic diversity of HIV-1 group M from Cameroon and Republic of
Congo
JOURNAL Arch. Virol. 144 (12), 2291-2311 (1999)
PUBMED 10664385
REFERENCE 2 (bases 1 to 381)
Show all sequences for reference 2
AUTHORS Mboudjeka,I., Zekeng,L., Takehisa,J., Yamashita,M., Ido,E.,
Miura,T., Kaptue,L. and Hayami,M.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-1997) Institute for Virus Research, Kyoto
University, Sakyo-ku, Kyoto, Kyoto Prefecture 606, Japan
REFERENCE 3
Show all sequences for reference 3
AUTHORS Mboudjeka,I., Zekeng,L., Takehisa,J., Miura,T., Ido,E.,
Yamashita,M., Kaptue,L. and Hayami,M.
TITLE HIV type 1 genetic variability in the northern part of Cameroon.
JOURNAL AIDS Res. Hum. Retroviruses. 15(11); 951-6 (1999)
PUBMED 10445806
COMMENT The sequences form this patient (env C2-V4 here and pol integrase
region in the entry with accession number AF028086) both cluster
within subtype A in phylogenetic analyses, but also cluster with
the CRF11_cpx form which is compsed of subytpe A in the integrase
and env V3 regions. Thus, this virus could represent an isolate of
the CRF11_cpx form.
FEATURES Location/Qualifiers
source 1..381
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CMR890"
/db_xref="taxon:11676"
/note="from Muslim in the northen part of Cameroon"
gene <1..>381
/gene="env"
CDS <1..>381
/gene="env"
/note="C2V3C3V4 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAF00562.1"
/db_xref="GI:6006659"
/translation="AEGEIKIRSENLTNNAKTIIVQFNNSVGINCTRPSNNTRRSIRI
GPGQAFYATDIIGDIREAHCNVSKKEWKSMLGQVAMQLKIKFNKAKIVFDEPSGGDIE
ITTHSFNCRGEFFYCSTSGLFNKSW"
BASE COUNT 152 a 53 c 81 g 95 t
ORIGIN
1 gcagaagggg agataaagat tagatctgaa aacctcacaa acaatgctaa aaccataata
61 gtacagttta acaattctgt aggaattaat tgtaccagac ctagcaacaa tacaagaaga
121 agtatacgta taggaccagg acaagctttc tatgccactg atataatagg ggatataaga
181 gaagcacatt gtaatgttag taaaaaggaa tggaagagca tgttaggcca ggtagctatg
241 caattaaaaa tcaagtttaa caaagcaaaa atagtctttg atgaaccctc agggggggat
301 atagaaatta caacacatag ctttaattgt agaggagaat ttttctattg cagtacatca
361 ggactgttta ataagagttg g
//
last modified: Tue May 31 10:56 2022