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LOCUS	    AF028328		     381 bp    DNA     linear	VRL 29-SEP-2000
DEFINITION  HIV-1 isolate CMR890 from Cameroon, envelope glycoprotein C2V3C3V4
	    region (env) gene, partial cds
ACCESSION   AF028328
VERSION     AF028328.1 GI:6006658
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 381)
            Show all sequences for reference 1
  AUTHORS   Mboudjeka,I., Bikandou,B., Zekeng,L., Takehisa,J., Harada,Y.,
	    Yamaguchi-Kabata,Y., Taniguchi,Y., Ido,E., Parra,H., Kaptue,L.,
	    M'pelle,P., M'Pele,P., Parra,H.J., Ikeda,M., Hayami,M. and
	    Miura,T.
  TITLE     Genetic diversity of HIV-1 group M from Cameroon and Republic of
	    Congo
  JOURNAL   Arch. Virol. 144 (12), 2291-2311 (1999)
  PUBMED    10664385
REFERENCE   2 (bases 1 to 381)
            Show all sequences for reference 2
  AUTHORS   Mboudjeka,I., Zekeng,L., Takehisa,J., Yamashita,M., Ido,E.,
	    Miura,T., Kaptue,L. and Hayami,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-1997) Institute for Virus Research, Kyoto
	    University, Sakyo-ku, Kyoto, Kyoto Prefecture 606, Japan
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Mboudjeka,I., Zekeng,L., Takehisa,J., Miura,T., Ido,E.,
	    Yamashita,M., Kaptue,L. and Hayami,M.
  TITLE     HIV type 1 genetic variability in the northern part of Cameroon.
  JOURNAL   AIDS Res. Hum. Retroviruses. 15(11); 951-6 (1999)
  PUBMED    10445806
COMMENT     The sequences form this patient (env C2-V4 here and pol integrase
	    region in the entry with accession number AF028086) both cluster
	    within subtype A in phylogenetic analyses, but also cluster with
	    the CRF11_cpx form which is compsed of subytpe A in the integrase
	    and env V3 regions. Thus, this virus could represent an isolate of
	    the CRF11_cpx form.
FEATURES             Location/Qualifiers
     source	     1..381
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CMR890"
		     /db_xref="taxon:11676"
		     /note="from Muslim in the northen part of Cameroon"
     gene	     <1..>381
		     /gene="env"
     CDS	     <1..>381
		     /gene="env"
		     /note="C2V3C3V4 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAF00562.1"
		     /db_xref="GI:6006659"
		     /translation="AEGEIKIRSENLTNNAKTIIVQFNNSVGINCTRPSNNTRRSIRI
		     GPGQAFYATDIIGDIREAHCNVSKKEWKSMLGQVAMQLKIKFNKAKIVFDEPSGGDIE
		     ITTHSFNCRGEFFYCSTSGLFNKSW"
BASE COUNT	152 a	  53 c	   81 g     95 t
ORIGIN
       1 gcagaagggg agataaagat tagatctgaa aacctcacaa acaatgctaa aaccataata 
      61 gtacagttta acaattctgt aggaattaat tgtaccagac ctagcaacaa tacaagaaga 
     121 agtatacgta taggaccagg acaagctttc tatgccactg atataatagg ggatataaga 
     181 gaagcacatt gtaatgttag taaaaaggaa tggaagagca tgttaggcca ggtagctatg 
     241 caattaaaaa tcaagtttaa caaagcaaaa atagtctttg atgaaccctc agggggggat 
     301 atagaaatta caacacatag ctttaattgt agaggagaat ttttctattg cagtacatca 
     361 ggactgttta ataagagttg g
//
last modified: Tue May 31 10:56 2022


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