View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AF027788 618 bp DNA linear VRL 02-APR-1998
DEFINITION HIV-1 isolate C-499Nef-I19C from USA, nef protein (nef) gene,
partial cds
ACCESSION AF027788
VERSION AF027788.1 GI:2992591
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 618)
Show all sequences for reference 1
AUTHORS Wei,Q. and Fultz,P.N.
TITLE Extensive diversification of human immunodeficiency virus type 1
subtype B strains during dual infection of a chimpanzee that
progressed to AIDS
JOURNAL J. Virol. 72 (4), 3005-3017 (1998)
PUBMED 9525623
REFERENCE 2 (bases 1 to 618)
Show all sequences for reference 2
AUTHORS Wei,Q. and Fultz,P.N.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-1997) Microbiology, University of Alabama at
Birmingham, BBRB 511, Birmingham, AL 35294-2170, USA
COMMENT Sequence from chimpanzee C499 infected with strains SF2 and LAI.
FEATURES Location/Qualifiers
source 1..618
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="C-499Nef-I19C"
/db_xref="taxon:11676"
/note="from chimpanzees housed in the US"
gene 1..>618
/gene="nef"
CDS 1..>618
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AAC40633.1"
/db_xref="GI:2992592"
/translation="MGGKWSKSSIIGWPAIRERMRRAEPAADGVGAASRDLEKHGAIT
TSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAGIDLSHFLKEKGGLEGLVW
SQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGE
DNILLHPMSLHGMEDAEKEVLVWRFDSKLAFHHVARELHPEYYKDC"
BASE COUNT 198 a 126 c 170 g 124 t
ORIGIN
1 atgggtggca agtggtcaaa aagtagtata attggatggc ctgctataag ggaaagaatg
61 agacgagctg aaccagcagc agatggggtg ggagcagcat ctcgagacct agaaaaacat
121 ggagcaatca caactagcaa tacagcagct accaatgctg attgtgcctg gctagaagca
181 caagaggagg aggaagtggg ttttccagtc agacctcagg tacctttaag accaatgact
241 tacaaggcag gtatagatct tagccacttt ttaaaagaaa aggggggact ggaagggcta
301 gtttggtccc aaaaaagaca agatatcctt gatctgtgga tctaccacac acaaggctac
361 ttccctgatt ggcagaacta cacaccaggg ccagggatca gatatccact gacctttgga
421 tggtgcttca agctagtacc agttgagcca gataaggtag aagaggccaa tgaaggagag
481 gacaacatct tgttacaccc tatgagcctg catggaatgg aggacgcgga gaaagaagtg
541 ttagtgtgga gatttgacag caaactagcc ttccatcacg tagcccgaga gctgcatccg
601 gagtactaca aagactgc
//
last modified: Tue May 31 10:56 2022