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LOCUS	    AF009399		    1173 bp    DNA     linear	VRL 11-AUG-1997
DEFINITION  HIV-1 isolate 92UG035 from Uganda, pol pseudogene, partial sequence
ACCESSION   AF009399
VERSION     AF009399.1 GI:2338342
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1173)
            Show all sequences for reference 1
  AUTHORS   Cornelissen,M., van Den Burg,R., Zorgdrager,F., Lukashov,V. and
	    Goudsmit,J.
  TITLE     pol gene diversity of five human immunodeficiency virus type 1
	    subtypes: evidence for naturally occurring mutations that
	    contribute to drug resistance, limited recombination patterns, and
	    common ancestry for subtypes B and D
  JOURNAL   J. Virol. 71 (9), 6348-6358 (1997)
  PUBMED    9261352
REFERENCE   2 (bases 1 to 1173)
            Show all sequences for reference 2
  AUTHORS   Cornelissen,M.T.E., Van de Burg,R., Zorgdrager,F., Lukashov,V. and
	    Goudsmit,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-1997) Department of Human Retrovirus Laboratory,
	    Academic Medical Centre, Meibergdreef 15, Amsterdam 1105AZ, The
	    Netherlands
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   WHO Global Programme on AIDS. and WHO Global Programme on AIDS
  TITLE     HIV type 1 variation in World Health Organization-sponsored vaccine
	    evaluation sites: genetic screening, sequence analysis, and
	    preliminary biological characterization of selected viral strains.
	    WHO Network for HIV Isolation and Characterization
  JOURNAL   AIDS Res. Hum. Retroviruses 10 (11), 1327-1343 (1994)
  PUBMED    7545977
COMMENT     Isolated from seropositive individual in Uganda (UG) for the UNAIDS
	    Network for HIV Isolation and Characterization. Biotypes were
	    determined by MT-2 syncytium assay; however, both
	    syncytium-inducing (SI) and non-syncytium-inducing (NSI) variants
	    may be present in the viral "swarm" for each isolate. Recent
	    studies indicate that NSI isolates contain predominantly CCR5-using
	    variants while most SI isolates contain both CXCR4 (SI) and CCR5
	    (NSI) variants. Some SI isolates may contain dual-tropic variants
	    that use both CXCR4 and CCR5 co-receptors. The isolate 92UG035 is
	    available from the NIH AIDS Reagent program, and is NSI R5.
FEATURES             Location/Qualifiers
     source	     1..1173
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="92UG035"
		     /db_xref="taxon:11676"
     gene	     <1..>1173
		     /gene="pol"
		     /note="pol polyprotein"
		     /pseudo="pol polyprotein"
     CDS	     <1..>1173
		     /gene="pol"
		     /pseudo="pol"
		     /codon_start="1"
		     /transl_table="1"
BASE COUNT	458 a	 191 c	  245 g    279 t
ORIGIN
       1 ctttggcaac gaccccttgt cacaataaaa ataggaggac agttaaaaga agctctatta 
      61 gatacaggag cagatgatac agtattagaa gatataaatt tgccaggaaa atggaaacca 
     121 aaaatgatag ggggaattgg aggttttatc aaggtaaaac agtatgatca gatacttata 
     181 gaaatttgtg gaaaaaaggc tataggtaca gtcctagtag gacctacacc tgtcaacata 
     241 attgggagaa atatgttgac tcagattggt tgtactttaa atttcccaat tagtcctatt 
     301 gagactgtac cagtaacatt aaaaccagga atggatggcc caaggattaa acaatggcca 
     361 ttgacagaag aaaaaataaa agcattaaca gaaatttgta gagagatgga aaaggaagga 
     421 aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc tataaagaaa 
     481 aaagatagca ctaaatggag aaaattagta gattttagag agctcaataa aagaactcag 
     541 gacttctggg aagttcaatt aggaataccg catcccgcag gtttaaaaaa gaaaaaatca 
     601 gtaacagtac tagatgtggg ggacgcatat ttttcagttc ctttagatga aggcttcaga 
     661 aagtatactg cattcaccat acctagtata aacaatgaga caccaggaat caggtatcag 
     721 tacaatgtgc ttccacaggg atggaaagga tcaccagcga tattccagac tagcatgata 
     781 aaaatcttgg agccctttag atcacaaaat ccagaaataa ttatctatca atacatggat 
     841 gattgtatgt aggatctgat ttagaaatag ggcaacatag aacaaaagta gaggattgag 
     901 agctcatcta ttaaggtggg gatttgctac accagacaaa aaacatcaga aagaaccccc 
     961 atttctttgg atgggatatg aactccatcc tgacaaatgg acagtccagc ctatacagct 
    1021 gccaaacaaa gacagctgga ctgtcaatga tatacagaaa ttagtgggaa aactaaattg 
    1081 ggcaagtcaa atttatccag ggattaaagt aaagcagctg tgtaaactcc tcagaggagc 
    1141 caaaccacta acagtgtagt aacactgact gag
//
last modified: Tue May 31 10:56 2022


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