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LOCUS AF009399 1173 bp DNA linear VRL 11-AUG-1997
DEFINITION HIV-1 isolate 92UG035 from Uganda, pol pseudogene, partial sequence
ACCESSION AF009399
VERSION AF009399.1 GI:2338342
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1173)
Show all sequences for reference 1
AUTHORS Cornelissen,M., van Den Burg,R., Zorgdrager,F., Lukashov,V. and
Goudsmit,J.
TITLE pol gene diversity of five human immunodeficiency virus type 1
subtypes: evidence for naturally occurring mutations that
contribute to drug resistance, limited recombination patterns, and
common ancestry for subtypes B and D
JOURNAL J. Virol. 71 (9), 6348-6358 (1997)
PUBMED 9261352
REFERENCE 2 (bases 1 to 1173)
Show all sequences for reference 2
AUTHORS Cornelissen,M.T.E., Van de Burg,R., Zorgdrager,F., Lukashov,V. and
Goudsmit,J.
TITLE Direct Submission
JOURNAL Submitted (19-JUN-1997) Department of Human Retrovirus Laboratory,
Academic Medical Centre, Meibergdreef 15, Amsterdam 1105AZ, The
Netherlands
REFERENCE 3
Show all sequences for reference 3
AUTHORS WHO Global Programme on AIDS. and WHO Global Programme on AIDS
TITLE HIV type 1 variation in World Health Organization-sponsored vaccine
evaluation sites: genetic screening, sequence analysis, and
preliminary biological characterization of selected viral strains.
WHO Network for HIV Isolation and Characterization
JOURNAL AIDS Res. Hum. Retroviruses 10 (11), 1327-1343 (1994)
PUBMED 7545977
COMMENT Isolated from seropositive individual in Uganda (UG) for the UNAIDS
Network for HIV Isolation and Characterization. Biotypes were
determined by MT-2 syncytium assay; however, both
syncytium-inducing (SI) and non-syncytium-inducing (NSI) variants
may be present in the viral "swarm" for each isolate. Recent
studies indicate that NSI isolates contain predominantly CCR5-using
variants while most SI isolates contain both CXCR4 (SI) and CCR5
(NSI) variants. Some SI isolates may contain dual-tropic variants
that use both CXCR4 and CCR5 co-receptors. The isolate 92UG035 is
available from the NIH AIDS Reagent program, and is NSI R5.
FEATURES Location/Qualifiers
source 1..1173
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="92UG035"
/db_xref="taxon:11676"
gene <1..>1173
/gene="pol"
/note="pol polyprotein"
/pseudo="pol polyprotein"
CDS <1..>1173
/gene="pol"
/pseudo="pol"
/codon_start="1"
/transl_table="1"
BASE COUNT 458 a 191 c 245 g 279 t
ORIGIN
1 ctttggcaac gaccccttgt cacaataaaa ataggaggac agttaaaaga agctctatta
61 gatacaggag cagatgatac agtattagaa gatataaatt tgccaggaaa atggaaacca
121 aaaatgatag ggggaattgg aggttttatc aaggtaaaac agtatgatca gatacttata
181 gaaatttgtg gaaaaaaggc tataggtaca gtcctagtag gacctacacc tgtcaacata
241 attgggagaa atatgttgac tcagattggt tgtactttaa atttcccaat tagtcctatt
301 gagactgtac cagtaacatt aaaaccagga atggatggcc caaggattaa acaatggcca
361 ttgacagaag aaaaaataaa agcattaaca gaaatttgta gagagatgga aaaggaagga
421 aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc tataaagaaa
481 aaagatagca ctaaatggag aaaattagta gattttagag agctcaataa aagaactcag
541 gacttctggg aagttcaatt aggaataccg catcccgcag gtttaaaaaa gaaaaaatca
601 gtaacagtac tagatgtggg ggacgcatat ttttcagttc ctttagatga aggcttcaga
661 aagtatactg cattcaccat acctagtata aacaatgaga caccaggaat caggtatcag
721 tacaatgtgc ttccacaggg atggaaagga tcaccagcga tattccagac tagcatgata
781 aaaatcttgg agccctttag atcacaaaat ccagaaataa ttatctatca atacatggat
841 gattgtatgt aggatctgat ttagaaatag ggcaacatag aacaaaagta gaggattgag
901 agctcatcta ttaaggtggg gatttgctac accagacaaa aaacatcaga aagaaccccc
961 atttctttgg atgggatatg aactccatcc tgacaaatgg acagtccagc ctatacagct
1021 gccaaacaaa gacagctgga ctgtcaatga tatacagaaa ttagtgggaa aactaaattg
1081 ggcaagtcaa atttatccag ggattaaagt aaagcagctg tgtaaactcc tcagaggagc
1141 caaaccacta acagtgtagt aacactgact gag
//
last modified: Tue May 31 10:56 2022